Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2679 ATGGCCACAAAAGAAGGCAAAGCTATAGGTATAGACCTAGGCACCACCTACAGCTGCGTGGGCGTGTGGCAAAACGACCGCGTAGAGATCATTCCCAACGATCAAGGCAACAGAACCACCCCCTCCTACGTAGCCTTCACCGACACAGAGAGGCTAATCGGAGATGCAGCAAAGAACCAAGTAGCCATGAACCCCCGGAACACCGTCTTCGACGCCAAGCGTTTAATCGGTCGAAGATACTCCGATGCGTCGGTTCAAAACGACATGAAGCTGTGGCCGTTTAAGGTGATCGCTGGCCCAGGCGACAAGCCCATGATCGTGGTAACTTACAAAGGCGAAGAGAAGACGTTTGCGGCGGAAGAGATATCTTCGATGGTTTTGATAAAGATGAGGGAGGTAGCAGAGGCGTTTCTGGGTCACGCCGTTAAAAACGCGGTGATAACGGTTCCTGCTTATTTCAACGACTCGCAGAGACAAGCAACGAAAGATGCAGGTGCTATTTCTGGTTTGAACGTGTTGAGAATCATCAACGAGCCTACCGCTGCGGCTATTGCTTATGGGTTGGACAAGAAAGCTTCGAGAAAAGGTGAACAGAACGTGCTTATCTTCGATTTGGGTGGTGGAACTTTCGATGTTTCTCTGTTAACCATCGAAGAGGGGATTTTCGAGGTGAAAGCCACTGCGGGTGATACGCATCTCGGTGGTGAAGATTTTGATAACAGAATGGTGAATCACTTTGTGTCTGAGTTCAGGAGGAAGAACAAGAAGGACATTAGTGGGAATGCAAGAGCTTTGAGGAGGTTGAGAACAGCGTGTGAGAGGGCTAAGAGGACGTTGTCTTCGACTGCACAGACAACGATTGAGATTGATTCGTTGTACGAAGGGATTGATTTCTATGCCACGATTACGAGGGCGAGGTTTGAGGAGTTGAACATGGATTTGTTCAGGAAGTGCATGGAGCCTGTGGAAAAGTGTCTCCGAGATGCCAAGATTGACAAGAGTCACGTTCACGAGGTGGTTCTTGTTGGTGGGTCCACTAGGATCCCCAAGGTTCAGCAACTCTTGCAGGATTTCTTCAATGGGAAAGAGCTTTGCAAGAGTATTAACCCTGATGAAGCTGTTGCGTATGGTGCAGCAGTGCAAGCAGCTATTTTGAGTGGTGAAGGAGATGAGAAGATGGTGAAGGATGCAGAGAGGTATAAGGCAGAGGATGAGGAGGTGAAGAAGAAAGTGGAGGCGAAGAACTCGCTTGAGAATTACGCGTACAACATGAGGAACACTATAAGGGATGAGAAGATTGGAGGAAAGTTGAGTCCAGAGGAAAAGCAGAAGATTGAGAAGGCAGTGGAAGATGCTATACAGTGGTTGGAGGGGAACCAGTTGGCTGAAGTGGATGAGTTTGAGGATAAGCAGAAGGAGTTGGAAGGGATTTGCAATCCCATCATTGCTAAGATGTATCAAGGTGGCGGTGCTGGGGGTGATGTGCCTATGGGTGATGACATGCCTGGTGATGGCTCTGCCTCTGGTTCTGGTGCTGGTTCTGGTGCTGGACCTAAGATTGAAGAGGTTGATTGA 1575 0.4889 MATKEGKAIGIDLGTTYSCVGVWQNDRVEIIPNDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPRNTVFDAKRLIGRRYSDASVQNDMKLWPFKVIAGPGDKPMIVVTYKGEEKTFAAEEISSMVLIKMREVAEAFLGHAVKNAVITVPAYFNDSQRQATKDAGAISGLNVLRIINEPTAAAIAYGLDKKASRKGEQNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVSEFRRKNKKDISGNARALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYATITRARFEELNMDLFRKCMEPVEKCLRDAKIDKSHVHEVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGDEKMVKDAERYKAEDEEVKKKVEAKNSLENYAYNMRNTIRDEKIGGKLSPEEKQKIEKAVEDAIQWLEGNQLAEVDEFEDKQKELEGICNPIIAKMYQGGGAGGDVPMGDDMPGDGSASGSGAGSGAGPKIEEVD* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2679 524 CDD HSPA1-2_6-8-like_NBD 8 386 - -
Apr9g2679 524 ProSitePatterns Heat shock hsp70 proteins family signature 3. 339 353 IPR018181 -
Apr9g2679 524 Pfam Hsp70 protein 391 487 IPR013126 GO:0005524|GO:0140662
Apr9g2679 524 Pfam Hsp70 protein 8 389 IPR013126 GO:0005524|GO:0140662
Apr9g2679 524 Gene3D - 191 365 - -
Apr9g2679 524 PANTHER HEAT SHOCK PROTEIN 70KDA 391 494 IPR013126 GO:0005524|GO:0140662
Apr9g2679 524 PANTHER HEAT SHOCK PROTEIN 70KDA 3 393 IPR013126 GO:0005524|GO:0140662
Apr9g2679 524 Gene3D - 408 524 IPR029048 -
Apr9g2679 524 PRINTS 70kDa heat shock protein signature 7 20 - -
Apr9g2679 524 PRINTS 70kDa heat shock protein signature 35 47 - -
Apr9g2679 524 PRINTS 70kDa heat shock protein signature 57 65 - -
Apr9g2679 524 PRINTS 70kDa heat shock protein signature 145 165 - -
Apr9g2679 524 PRINTS 70kDa heat shock protein signature 208 218 - -
Apr9g2679 524 PRINTS 70kDa heat shock protein signature 336 352 - -
Apr9g2679 524 PRINTS 70kDa heat shock protein signature 368 388 - -
Apr9g2679 524 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 412 493 IPR029048 -
Apr9g2679 524 ProSitePatterns Heat shock hsp70 proteins family signature 1. 11 18 IPR018181 -
Apr9g2679 524 SUPERFAMILY Actin-like ATPase domain 7 190 IPR043129 -
Apr9g2679 524 MobiDBLite consensus disorder prediction 488 524 - -
Apr9g2679 524 ProSitePatterns Heat shock hsp70 proteins family signature 2. 202 215 IPR018181 -
Apr9g2679 524 Gene3D - 9 383 - -
Apr9g2679 524 SUPERFAMILY Actin-like ATPase domain 195 387 IPR043129 -
Apr9g2679 524 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 37C-RELATED 3 393 - -
Apr9g2679 524 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 37C-RELATED 391 494 - -
Apr9g2679 524 Gene3D - 70 125 - -
Apr9g2679 524 Gene3D Actin; Chain A, domain 4 234 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2679 Apr-Chr9 33881280 33883495 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2679 5 524 Calmodulin-binding Proteins AT5G02500 84.542 0.0 899
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2679 K03283 - csin:114277576 802.742