LGRPv2

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Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr9g2677	ATGGAAGCCAGCGCTGGTCTGGTCGCTGGTTCTCACAACCGCAACGAGCTCGTTGTCATTCATAACCATGAAGAGCACAAGCCTTTGAAGAACTTGGATGGTCAAGTGTGTGAGATATGTGGCGATGATGTGGGACTCACGGTGGATGGTGACTTGTTTGTGGCATGCAATGAGTGTGGTTTTCCGGTATGTCGACCATGTTATGAGTATGAAAGGAGAGAAGGGAGACAAGTTTGCCCTCAGTGTAAAACCAGATACAAACGTCTCAAAGGGAGCCCACGGGTTGAGGGAGATGAAGATGAGGAAGATGATGATGATATTGAACATGAATTTAATATTGAGGAACAAAGCAAGCATAACCATTCTGCTGAGGCCATGCTGCATGGGAAGATGAGTTATGGAAGAGGTCCTGAAGATGATGAGAATGCTCATTTCCCAGCTGTTATTTCTGGGGGTCGCTCTAGGCCTGTTAGTGGGGAGTTCCCAATAGCGTCTCATTATGGGGAGCAAATATTATCTTCTTCACTGCATAATCGAGTGCACCCATATCCGGGTTCTGATCCTCGAAATGCAAGATGGGATGAAACCAAAGAGGATAGAGTGGATGACTGGAAATTACAACAAGGGAATTTGGGACCTGAACCTGATGAAGATCCAGATGCAGTCATGTTAGATGAAGCAAGGCAACCACTGTCAAGGAAGGTACCAATAGCATCTAGCAAAGTGAATCCATATAGGATGGTGATTGTGGCACGGCTTGTCATTCTTGCCTTCTTCCTCAGATACAGAATTTTGAACCCAGTACATGATGCATTGGGGCTATGGCTAACTTCTATTATATGTGAAATCTGGTTTGCATTTTCATGGATCCTTGATCAGTTTCCTAAATGGTTTCCTATTGATCGAGAGACCTATCTTGATCGCCTTTCAATCAGGTATGAGCGTGAAGGTGAACCCAACATGCTTGCTCCTGTAGATGTCTTTGTTAGTACCGTGGATCCCATGAAGGAACCTCCTTTGGTTACAGCGAACACTGTTCTTTCAATCTTGGCCATGGATTACCCAGTTGATAAGATATCATGCTACATTTCTGATGATGGAGCTTCAATGTGTACATTTGAAGCCTTGTCAGAAACTGCAGAGTTTGCTAGGAAGTGGGTACCATTCTGCAAGAAATTTTCCATAGAACCTCGAGCACCAGAAATGTACTTCTGTGAGAAAATTGACTACTTACAGGACAAAGTGCAACCCACCTTTGTTAAGGAGCGTAGAGCCATGAAGAGAGAATATGAGGAGTTCAAGGTTAGGATCAATGCATTAGTGGCAAAAGCCCAGAAGGTTCCTCAAGGAGGATGGATTATGCAGGATGGGACACCATGGCCAGGAAACAATACTAAGGACCATCCTGGTATGATTCAAGTCTTTCTTGGTCACAGTGGAGGTCATGATACTGAAGGAAACCAACTTCCTCGTCTTGTTTATGTTTCTCGAGAGAAAAGGCCTGGATTCCAACACCACAAGAAAGCCGGTGCTATGAATGCTTTGATTCGGGTCTCTGCTGTGCTAACAAATGCTCCTTTCATGTTGAACTTGGATTGTGATCATTATGTGAACAACAGCAAGGCTGCTAGAGAGGCCATGTGCTTCTTAATGGATCCCCAAACTGGGAAGAAGGTCTGCTATGTCCAGTTTCCTCAAAGATTTGATGGCATAGATAGGCATGATCGTTATGCCAACAGGAACACAGTTTTCTTTGATATTAACATGAAGGGTCTAGATGGTATTCAGGGTCCTGTATATGTTGGCACAGGTTGTGTATTCAGGAGGCAAGCTTTATATGGCTATAATCCTCCCAAGGATCCTAAGCGTCCCAAAATGGTAACTTGTGATTGCTGCCCATGTTTTGGAAAGCGCAAGAAGCATGCAAAGAATGAAGCAAATGGAGAGGCTGCAAGCCTAAGAGGAGCTGATGATGACAAAGAAGTGCTAATGTCCCAGATGAATTTTGAAAAGAAATTTGGGCAGTCATCTATTTTTGTGACATCAACCTTGATGGAAGAGGGTGGTGTGCCTCCTACCTCAAGTCCAGCAAGCCAGCTTAAAGAAGCCATTCATGTAATCAGTTGTGGATATGAAGATAAAACTGAATGGGGAATTGAGCTAGGTTGGATTTATGGGTCTATTACAGAGGATATTCTAACAGGTTTTAAGATGCATTGCCGTGGTTGGAGGTCTATTTATTGCATGCCAAAGAGAACTGCATTCAAGGGCACTGCTCCTATCAACTTGTCAGATAGACTTAACCAAGTTCTTCGTTGGGCCCTTGGCTCCATTGAGATCTTCTTCAGTCGCCATTGCCCTTTATGGTATGGCTATAAGGAAGGGAAGCTGAAGTGGCTAGAGAGATTTGCCTATGCAAACACAACTGTTTATCCCTTCACCTCCATACCTCTTGTTGCCTATTGTATTCTTCCTGCTGTGTGTTTACTCACTGATAAATTCATCATGCCACCGATAAGCACTTTTGCTGGTTTGTACTTTGTTGCTCTCTTCTCTTCAATCATTGCAACGGGTCTTCTTGAGTTGAAATGGAGTGGAGTGAGCATTGAGGAATGGTGGAGAAATGAGCAATTTTGGGTCATTGGTGGTGTGTCAGCACATCTCTTTGCTGTCATACAAGGTCTTCTGAAGGTTCTGGCCGGAATTGATACCAACTTCACTGTTACATCCAAGGCAGCAGATGATGAGGAATTTGGAGAACTATACACCTTTAAGTGGACTACTCTTCTGATTCCTCCAACCACTATCTTAATAATCAACATTGTTGGGGTTGTTGCTGGAATCTCAGATGCCATAAACAATGGGTACCAATCTTGGGGACCTCTATTTGGAAAACTTTTCTTTTCTTTTTGGGTGATTGTTCATCTGTATCCTTTCCTTAAAGGTTTGATGGGCCGGCAAAACCGCACACCCACAATTGTTGTTATATGGTCAGTGCTATTGGCTTCCATTTTCTCCTTGCTTTGGGTAAGAATTGACCCATTTGTATTAAAAACTAAGGGACCTGATACTAAGTTATGTGGAATCAACTGTTGA	3096	0.4344	MEASAGLVAGSHNRNELVVIHNHEEHKPLKNLDGQVCEICGDDVGLTVDGDLFVACNECGFPVCRPCYEYERREGRQVCPQCKTRYKRLKGSPRVEGDEDEEDDDDIEHEFNIEEQSKHNHSAEAMLHGKMSYGRGPEDDENAHFPAVISGGRSRPVSGEFPIASHYGEQILSSSLHNRVHPYPGSDPRNARWDETKEDRVDDWKLQQGNLGPEPDEDPDAVMLDEARQPLSRKVPIASSKVNPYRMVIVARLVILAFFLRYRILNPVHDALGLWLTSIICEIWFAFSWILDQFPKWFPIDRETYLDRLSIRYEREGEPNMLAPVDVFVSTVDPMKEPPLVTANTVLSILAMDYPVDKISCYISDDGASMCTFEALSETAEFARKWVPFCKKFSIEPRAPEMYFCEKIDYLQDKVQPTFVKERRAMKREYEEFKVRINALVAKAQKVPQGGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGHDTEGNQLPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYVNNSKAAREAMCFLMDPQTGKKVCYVQFPQRFDGIDRHDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQALYGYNPPKDPKRPKMVTCDCCPCFGKRKKHAKNEANGEAASLRGADDDKEVLMSQMNFEKKFGQSSIFVTSTLMEEGGVPPTSSPASQLKEAIHVISCGYEDKTEWGIELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRTAFKGTAPINLSDRLNQVLRWALGSIEIFFSRHCPLWYGYKEGKLKWLERFAYANTTVYPFTSIPLVAYCILPAVCLLTDKFIMPPISTFAGLYFVALFSSIIATGLLELKWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLAGIDTNFTVTSKAADDEEFGELYTFKWTTLLIPPTTILIINIVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVLKTKGPDTKLCGINC*	1032

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr9g2677	1031	Coils	Coil	423	443	-	-
	Apr9g2677	1031	Pfam	Cellulose synthase	325	1025	IPR005150	GO:0016020\|GO:0016760\|GO:0030244
	Apr9g2677	1031	PANTHER	CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 7 [UDP-FORMING]	1	1031	-	-
	Apr9g2677	1031	ProSiteProfiles	Zinc finger RING-type profile.	37	83	IPR001841	-
	Apr9g2677	1031	MobiDBLite	consensus disorder prediction	177	221	-	-
	Apr9g2677	1031	Pfam	Zinc-binding RING-finger	27	103	IPR027934	-
	Apr9g2677	1031	SUPERFAMILY	RING/U-box	21	105	-	-
	Apr9g2677	1031	MobiDBLite	consensus disorder prediction	188	205	-	-
	Apr9g2677	1031	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	20	109	IPR013083	-
	Apr9g2677	1031	SUPERFAMILY	Nucleotide-diphospho-sugar transferases	338	798	IPR029044	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr9g2677	Apr-Chr9	33867750	33872674	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr9g2677	1	1031	Cell Wall Biosynthesis	AT5G17420	86.100	0.0	1835

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr9g2677	K10999		-	gmx:100779834	2051.17

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Apr9g2677	9	33867750	33872674	Apr9g2677	9	33867750	33872674	ECH

Showing 1 to 1 of 1 entries