Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2677 ATGGAAGCCAGCGCTGGTCTGGTCGCTGGTTCTCACAACCGCAACGAGCTCGTTGTCATTCATAACCATGAAGAGCACAAGCCTTTGAAGAACTTGGATGGTCAAGTGTGTGAGATATGTGGCGATGATGTGGGACTCACGGTGGATGGTGACTTGTTTGTGGCATGCAATGAGTGTGGTTTTCCGGTATGTCGACCATGTTATGAGTATGAAAGGAGAGAAGGGAGACAAGTTTGCCCTCAGTGTAAAACCAGATACAAACGTCTCAAAGGGAGCCCACGGGTTGAGGGAGATGAAGATGAGGAAGATGATGATGATATTGAACATGAATTTAATATTGAGGAACAAAGCAAGCATAACCATTCTGCTGAGGCCATGCTGCATGGGAAGATGAGTTATGGAAGAGGTCCTGAAGATGATGAGAATGCTCATTTCCCAGCTGTTATTTCTGGGGGTCGCTCTAGGCCTGTTAGTGGGGAGTTCCCAATAGCGTCTCATTATGGGGAGCAAATATTATCTTCTTCACTGCATAATCGAGTGCACCCATATCCGGGTTCTGATCCTCGAAATGCAAGATGGGATGAAACCAAAGAGGATAGAGTGGATGACTGGAAATTACAACAAGGGAATTTGGGACCTGAACCTGATGAAGATCCAGATGCAGTCATGTTAGATGAAGCAAGGCAACCACTGTCAAGGAAGGTACCAATAGCATCTAGCAAAGTGAATCCATATAGGATGGTGATTGTGGCACGGCTTGTCATTCTTGCCTTCTTCCTCAGATACAGAATTTTGAACCCAGTACATGATGCATTGGGGCTATGGCTAACTTCTATTATATGTGAAATCTGGTTTGCATTTTCATGGATCCTTGATCAGTTTCCTAAATGGTTTCCTATTGATCGAGAGACCTATCTTGATCGCCTTTCAATCAGGTATGAGCGTGAAGGTGAACCCAACATGCTTGCTCCTGTAGATGTCTTTGTTAGTACCGTGGATCCCATGAAGGAACCTCCTTTGGTTACAGCGAACACTGTTCTTTCAATCTTGGCCATGGATTACCCAGTTGATAAGATATCATGCTACATTTCTGATGATGGAGCTTCAATGTGTACATTTGAAGCCTTGTCAGAAACTGCAGAGTTTGCTAGGAAGTGGGTACCATTCTGCAAGAAATTTTCCATAGAACCTCGAGCACCAGAAATGTACTTCTGTGAGAAAATTGACTACTTACAGGACAAAGTGCAACCCACCTTTGTTAAGGAGCGTAGAGCCATGAAGAGAGAATATGAGGAGTTCAAGGTTAGGATCAATGCATTAGTGGCAAAAGCCCAGAAGGTTCCTCAAGGAGGATGGATTATGCAGGATGGGACACCATGGCCAGGAAACAATACTAAGGACCATCCTGGTATGATTCAAGTCTTTCTTGGTCACAGTGGAGGTCATGATACTGAAGGAAACCAACTTCCTCGTCTTGTTTATGTTTCTCGAGAGAAAAGGCCTGGATTCCAACACCACAAGAAAGCCGGTGCTATGAATGCTTTGATTCGGGTCTCTGCTGTGCTAACAAATGCTCCTTTCATGTTGAACTTGGATTGTGATCATTATGTGAACAACAGCAAGGCTGCTAGAGAGGCCATGTGCTTCTTAATGGATCCCCAAACTGGGAAGAAGGTCTGCTATGTCCAGTTTCCTCAAAGATTTGATGGCATAGATAGGCATGATCGTTATGCCAACAGGAACACAGTTTTCTTTGATATTAACATGAAGGGTCTAGATGGTATTCAGGGTCCTGTATATGTTGGCACAGGTTGTGTATTCAGGAGGCAAGCTTTATATGGCTATAATCCTCCCAAGGATCCTAAGCGTCCCAAAATGGTAACTTGTGATTGCTGCCCATGTTTTGGAAAGCGCAAGAAGCATGCAAAGAATGAAGCAAATGGAGAGGCTGCAAGCCTAAGAGGAGCTGATGATGACAAAGAAGTGCTAATGTCCCAGATGAATTTTGAAAAGAAATTTGGGCAGTCATCTATTTTTGTGACATCAACCTTGATGGAAGAGGGTGGTGTGCCTCCTACCTCAAGTCCAGCAAGCCAGCTTAAAGAAGCCATTCATGTAATCAGTTGTGGATATGAAGATAAAACTGAATGGGGAATTGAGCTAGGTTGGATTTATGGGTCTATTACAGAGGATATTCTAACAGGTTTTAAGATGCATTGCCGTGGTTGGAGGTCTATTTATTGCATGCCAAAGAGAACTGCATTCAAGGGCACTGCTCCTATCAACTTGTCAGATAGACTTAACCAAGTTCTTCGTTGGGCCCTTGGCTCCATTGAGATCTTCTTCAGTCGCCATTGCCCTTTATGGTATGGCTATAAGGAAGGGAAGCTGAAGTGGCTAGAGAGATTTGCCTATGCAAACACAACTGTTTATCCCTTCACCTCCATACCTCTTGTTGCCTATTGTATTCTTCCTGCTGTGTGTTTACTCACTGATAAATTCATCATGCCACCGATAAGCACTTTTGCTGGTTTGTACTTTGTTGCTCTCTTCTCTTCAATCATTGCAACGGGTCTTCTTGAGTTGAAATGGAGTGGAGTGAGCATTGAGGAATGGTGGAGAAATGAGCAATTTTGGGTCATTGGTGGTGTGTCAGCACATCTCTTTGCTGTCATACAAGGTCTTCTGAAGGTTCTGGCCGGAATTGATACCAACTTCACTGTTACATCCAAGGCAGCAGATGATGAGGAATTTGGAGAACTATACACCTTTAAGTGGACTACTCTTCTGATTCCTCCAACCACTATCTTAATAATCAACATTGTTGGGGTTGTTGCTGGAATCTCAGATGCCATAAACAATGGGTACCAATCTTGGGGACCTCTATTTGGAAAACTTTTCTTTTCTTTTTGGGTGATTGTTCATCTGTATCCTTTCCTTAAAGGTTTGATGGGCCGGCAAAACCGCACACCCACAATTGTTGTTATATGGTCAGTGCTATTGGCTTCCATTTTCTCCTTGCTTTGGGTAAGAATTGACCCATTTGTATTAAAAACTAAGGGACCTGATACTAAGTTATGTGGAATCAACTGTTGA 3096 0.4344 MEASAGLVAGSHNRNELVVIHNHEEHKPLKNLDGQVCEICGDDVGLTVDGDLFVACNECGFPVCRPCYEYERREGRQVCPQCKTRYKRLKGSPRVEGDEDEEDDDDIEHEFNIEEQSKHNHSAEAMLHGKMSYGRGPEDDENAHFPAVISGGRSRPVSGEFPIASHYGEQILSSSLHNRVHPYPGSDPRNARWDETKEDRVDDWKLQQGNLGPEPDEDPDAVMLDEARQPLSRKVPIASSKVNPYRMVIVARLVILAFFLRYRILNPVHDALGLWLTSIICEIWFAFSWILDQFPKWFPIDRETYLDRLSIRYEREGEPNMLAPVDVFVSTVDPMKEPPLVTANTVLSILAMDYPVDKISCYISDDGASMCTFEALSETAEFARKWVPFCKKFSIEPRAPEMYFCEKIDYLQDKVQPTFVKERRAMKREYEEFKVRINALVAKAQKVPQGGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGHDTEGNQLPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYVNNSKAAREAMCFLMDPQTGKKVCYVQFPQRFDGIDRHDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQALYGYNPPKDPKRPKMVTCDCCPCFGKRKKHAKNEANGEAASLRGADDDKEVLMSQMNFEKKFGQSSIFVTSTLMEEGGVPPTSSPASQLKEAIHVISCGYEDKTEWGIELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRTAFKGTAPINLSDRLNQVLRWALGSIEIFFSRHCPLWYGYKEGKLKWLERFAYANTTVYPFTSIPLVAYCILPAVCLLTDKFIMPPISTFAGLYFVALFSSIIATGLLELKWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLAGIDTNFTVTSKAADDEEFGELYTFKWTTLLIPPTTILIINIVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVLKTKGPDTKLCGINC* 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2677 1031 Coils Coil 423 443 - -
Apr9g2677 1031 Pfam Cellulose synthase 325 1025 IPR005150 GO:0016020|GO:0016760|GO:0030244
Apr9g2677 1031 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 7 [UDP-FORMING] 1 1031 - -
Apr9g2677 1031 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
Apr9g2677 1031 MobiDBLite consensus disorder prediction 177 221 - -
Apr9g2677 1031 Pfam Zinc-binding RING-finger 27 103 IPR027934 -
Apr9g2677 1031 SUPERFAMILY RING/U-box 21 105 - -
Apr9g2677 1031 MobiDBLite consensus disorder prediction 188 205 - -
Apr9g2677 1031 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 109 IPR013083 -
Apr9g2677 1031 SUPERFAMILY Nucleotide-diphospho-sugar transferases 338 798 IPR029044 -
Apr9g2677 1031 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 1031 - -
Apr9g2677 1031 CDD mRING-HC-C4C4_CesA_plant 35 85 - -
Apr9g2677 1031 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 471 616 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2677 Apr-Chr9 33867750 33872674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2677 1 1031 Cell Wall Biosynthesis AT5G17420 86.100 0.0 1835
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2677 K10999 - gmx:100779834 2051.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2677 9 33867750 33872674 Apr9g2677 9 33867750 33872674 ECH