Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2665 ATGGCCAAAACATCACAGGTAAGAAACAATGCAAGCAATAGCAATAATCTTAACACTGTCACCACCAAGGTGAAACGAAAAAGAAGTGTCCCTAGAGACTCCCCACCTCAACGAAGCTCAATATACCGAGGAGTCACTAGGCACCGTTGGACAGGCCGATATGAAGCTCATTTGTGGGACAAGCATTGCTGGAATGAGTCACAGAACAAGAAAGGACGACAAGGTGCTTATGACAATGAAGAAGCAGCAGCACGTGCGTATGATCTAGCAGCACTGAAATACTGGGGTCAAGATACCATTATTAATTTTCCGTTATCAAACTACCAGAACGAAATGAAAGAAATGGAGGGTCAATCAAGGGAGGAGTATATTGGATCAATAAGGAGGAAAAGCAGTGGTTTTTCTCGGGGAGTTTCTAAATACAGAGGCGTTGCAAGACATCATTATAACGGAAGGTGGGAGGCTAGGATTGGCAAAGTTTTTGGCAATAAATATCTTTATCTCGGAACTTACGCCACCCAAGAAGAAGCTGCGACGGCCTATGACCTGGCAGCTATAGAATATCGTGGACTTAATGCTGTCACCAATTTCGATCTCAGCCGTTATATTAAGCGGCTTAAGCCTATCAACAACAATAATAACCGGATTAGCATTCATCTTACTAACATAAATCATAATTGTGATACCAACTTTACCCCAAACCCCAATCAAGAGCAAGAATTCAGCTTCTTCCACAATGAGGATTCACTAAATAATATTGGAGAAGAAGCCACGTCGGTCCCAACTCAGCCTCGCCCAGCTGGTGCTACGTCAGCATTGGAGCTTCTACTTCAGTCAACCAAGTTTAAGGAAATGATGGAGATGACATCTGTGGCCAGTTTATCAACACAGCTGGAATCTGGGTTGCCAAGGTGCAAATTTCCTGATCACATACAGACCTACTTTGAGTACGAAGATTTCAATAGATATGAACAAGTGGATGACATTTTGTTCCACGATCTCAACTCCATAGTGCCAATGCTCCATTGTGACCAATTCGACTTTGAGATTTAA 1053 0.4274 MAKTSQVRNNASNSNNLNTVTTKVKRKRSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKHCWNESQNKKGRQGAYDNEEAAARAYDLAALKYWGQDTIINFPLSNYQNEMKEMEGQSREEYIGSIRRKSSGFSRGVSKYRGVARHHYNGRWEARIGKVFGNKYLYLGTYATQEEAATAYDLAAIEYRGLNAVTNFDLSRYIKRLKPINNNNNRISIHLTNINHNCDTNFTPNPNQEQEFSFFHNEDSLNNIGEEATSVPTQPRPAGATSALELLLQSTKFKEMMEMTSVASLSTQLESGLPRCKFPDHIQTYFEYEDFNRYEQVDDILFHDLNSIVPMLHCDQFDFEI* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2665 350 CDD AP2 139 200 IPR001471 GO:0003700|GO:0006355
Apr9g2665 350 SMART rav1_2 41 110 IPR001471 GO:0003700|GO:0006355
Apr9g2665 350 SMART rav1_2 140 204 IPR001471 GO:0003700|GO:0006355
Apr9g2665 350 Pfam AP2 domain 41 96 IPR001471 GO:0003700|GO:0006355
Apr9g2665 350 Pfam AP2 domain 139 190 IPR001471 GO:0003700|GO:0006355
Apr9g2665 350 Gene3D AP2/ERF domain 139 200 IPR036955 GO:0003700|GO:0006355
Apr9g2665 350 Gene3D AP2/ERF domain 41 106 IPR036955 GO:0003700|GO:0006355
Apr9g2665 350 ProSiteProfiles AP2/ERF domain profile. 140 198 IPR001471 GO:0003700|GO:0006355
Apr9g2665 350 MobiDBLite consensus disorder prediction 1 42 - -
Apr9g2665 350 SUPERFAMILY DNA-binding domain 139 200 IPR016177 GO:0003677
Apr9g2665 350 MobiDBLite consensus disorder prediction 1 24 - -
Apr9g2665 350 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 330 - -
Apr9g2665 350 PRINTS Ethylene responsive element binding protein signature 42 53 IPR001471 GO:0003700|GO:0006355
Apr9g2665 350 PRINTS Ethylene responsive element binding protein signature 180 200 IPR001471 GO:0003700|GO:0006355
Apr9g2665 350 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 330 - -
Apr9g2665 350 ProSiteProfiles AP2/ERF domain profile. 41 104 IPR001471 GO:0003700|GO:0006355
Apr9g2665 350 SUPERFAMILY DNA-binding domain 40 106 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2665 Apr-Chr9 33785006 33787632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2665 37 267 AP2-EREBP Transcription Factor Family AT5G57390 55.187 2.68e-87 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Apr9g2665 AP2 1.5e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2665 K09285 - gmx:100793339 551.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2665 9 33785006 33787632 Apr9g2665 9 33785006 33787632 ECH
Apr9g2665 9 33785006 33787632 Apr1g2622 1 35608775 35610690 PCT