Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2641 ATGGGTAGGAGTTATGCACAAGTTAAAGGAGACGCCTTTGTGCCTCCATCAGAACAACCACCATATTTTCTTTCTCAGCCAAACCCACCTTTCACTCCTACTGTTCGATCTGATAGTTTCAGTTTTAACGATAAGGCCTTGAAGGTTAGTCCTAGCATTCTTCTCATCATTATAATTCTAGCTATTGTTTTCTTCATTTCTGGTTTGCTACACCTACTCGTTAGATTTCTATGGAGACCTCAAAGTAGAGAGCCTGATGATTTGGATAATGTCACTGCTCTTCAAGGCCAATTGCAGCAACTCTTCCATCTTCATGATGCTGGTGTTGACCAGTCCTTTATTGACACTCTCCCTGTGTTCCTTTACAAAGCCATCATAGGACTCAAGAACCCTTTTGATTGTGCTGTTTGTTTGTGTGAATTTGAGCCAGAAGACAAGCTCAGGTTGTTGCCAAAATGTAGCCATGCTTTTCACATGGAGTGTATTGATACTTGGCTCTTGTCACACTCTACATGTCCTCTTTGTAGAGCCAGCTTGCTTCCTGAATTCTCTGCAAACAACGCTTGTTCTCCCATTGTTCTTGTCCTAGAATCTGGGAGTGAGAGTTCAAGGGAGATTCTTCCTGAGGCTGCAGTTGGAAGAAGTAGTTCTGTTGTCACTACAAATTCTCACATTGATTGCCAGGGAGAGAGTGAATTTGGATCAACCCGTGTGGATTTGAAATCGGTTGAGTTAAGTGACAATCCTGATCCAACAGTGGCAGGAGATGCAGTGGCAAAAGTGGTCACTGTTAAGCTGGGAAAGTTCAGAAGCGTGGATGGTGGAGATGGTGAAGGAAGTAGCACCAACAATTTAGATGCTAGAAGGTGTTTTTCTATGGGGTCTTTTGCTTATGTTATGGATGAGAGTTCCTCACTTCAAGTACCCATAAGGACCCCAATCAAGAAGCAATCTAGTAAGAAGAAGCGTGTTTTGCCTTTGACTCCAGGACACAGGCCTGCAATGTCAGAATGTGACTTTGAATCCAGAAGGGATTTCAAATTCGCAGGCTTTGATGCTACTATTGTTGAGGATGTTGATGGTGCCGCAAGTACTTGTAATGGTGGAGGTGGTGCTGCTATTGGGAGCAGAAAGGAGAGTTTTTCTATATCAAAGATTTGGCTTAGGGGGAAAAAGGATAAGCCAAATGCAGTGGCAGATTCATCTAGAAGGGCTGTTTCATTTCGCTTCCCAGCACAGCGTAGCGTTGTTGTTGCTTCTACTAGTGCCACAGACGATTTGAAGGCAAAGAATTGCAAGTTTGACACAAGGAGTACTATTTCTGATATGGATATTGGGAAATGGGTGAGTGGAGGAGGAAGTGAGTTCGGTTATGATGAAGAAAGCCAAAGTTGTTATAGTGTGGATTCTCAAACTAGAGCGCCATCTTTTGCTAGAAGGACTTTGCTTTGGCTTACGGGAAGACAGAATAAGGTTGTTCATTCATCCTCCGATTCCAATCTCTAG 1506 0.4323 MGRSYAQVKGDAFVPPSEQPPYFLSQPNPPFTPTVRSDSFSFNDKALKVSPSILLIIIILAIVFFISGLLHLLVRFLWRPQSREPDDLDNVTALQGQLQQLFHLHDAGVDQSFIDTLPVFLYKAIIGLKNPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLPEFSANNACSPIVLVLESGSESSREILPEAAVGRSSSVVTTNSHIDCQGESEFGSTRVDLKSVELSDNPDPTVAGDAVAKVVTVKLGKFRSVDGGDGEGSSTNNLDARRCFSMGSFAYVMDESSSLQVPIRTPIKKQSSKKKRVLPLTPGHRPAMSECDFESRRDFKFAGFDATIVEDVDGAASTCNGGGGAAIGSRKESFSISKIWLRGKKDKPNAVADSSRRAVSFRFPAQRSVVVASTSATDDLKAKNCKFDTRSTISDMDIGKWVSGGGSEFGYDEESQSCYSVDSQTRAPSFARRTLLWLTGRQNKVVHSSSDSNL* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2641 501 ProSiteProfiles Zinc finger RING-type profile. 134 176 IPR001841 -
Apr9g2641 501 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 18 401 - -
Apr9g2641 501 Pfam Ring finger domain 133 176 IPR001841 -
Apr9g2641 501 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 18 401 - -
Apr9g2641 501 MobiDBLite consensus disorder prediction 1 21 - -
Apr9g2641 501 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 181 IPR013083 -
Apr9g2641 501 SUPERFAMILY RING/U-box 113 184 - -
Apr9g2641 501 CDD RING-H2_PA-TM-RING 133 176 - -
Apr9g2641 501 SMART ring_2 134 175 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2641 Apr-Chr9 33567826 33569853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2641 48 497 C3H Transcription Factor Family AT2G18650 46.482 1.11e-103 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2641 - - gmx:100797283 778.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2641 9 33567826 33569853 Apr9g2641 9 33567826 33569853 ECH