Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2640 ATGCCTCCTCCCACTCAACACCATCATGGAAACCCCCAATCTCAATCTCAATCCCAATCCCAACCCCAACCAAAGCCCAACCCCAACCTCCTCTCCCTCCTCCTCAAACCAATCATCATGCTCCTTCTCACCTCCCTGTTCTTCCTCTTCCTGGGCTTCGCCGCCTTCCTCCTCCTCCACCTCTTCCTTCTCGGCGGAGCCTTCCACCGCCTCCGATCCCGTCCTCCCCCCGCCGCCGCCACCACTACCTCCAACGGCTTCCCCCTTCGCGACATCAACAAACTCCCCCGCTTTCGTCTCTCCAAGGGATCCACACCCGACTCTCAATGCGTTGTCTGTTTGGATCCCTTTCGCAACGGCCAGTGCTGCAGAAGACTCGCCGCCTGTGGCCACCTCTTCCACCGCAGATGCGTCGACACGTGGCTCCTCAAGGTCGCCGCTTGTCCCACCTGCCGTACGCCTGTTCGATTAAATCCCCCACCTCCTCATTCTGCCGTAGATCAACCTGCTCAAGGTTCTCCCCAGTTTTCGACATGCTCCAATCCTTTATAG 552 0.5851 MPPPTQHHHGNPQSQSQSQSQPQPKPNPNLLSLLLKPIIMLLLTSLFFLFLGFAAFLLLHLFLLGGAFHRLRSRPPPAAATTTSNGFPLRDINKLPRFRLSKGSTPDSQCVVCLDPFRNGQCCRRLAACGHLFHRRCVDTWLLKVAACPTCRTPVRLNPPPPHSAVDQPAQGSPQFSTCSNPL* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2640 183 ProSiteProfiles Zinc finger RING-type profile. 110 152 IPR001841 -
Apr9g2640 183 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 6 161 - -
Apr9g2640 183 MobiDBLite consensus disorder prediction 1 25 - -
Apr9g2640 183 MobiDBLite consensus disorder prediction 159 183 - -
Apr9g2640 183 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 157 IPR013083 -
Apr9g2640 183 MobiDBLite consensus disorder prediction 8 25 - -
Apr9g2640 183 MobiDBLite consensus disorder prediction 168 183 - -
Apr9g2640 183 Pfam Ring finger domain 109 152 IPR001841 -
Apr9g2640 183 SUPERFAMILY RING/U-box 92 159 - -
Apr9g2640 183 PANTHER RING-H2 FINGER PROTEIN ATL56 6 161 - -
Apr9g2640 183 SMART ring_2 110 151 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2640 3 165 C3H Transcription Factor Family AT2G18670 42.771 5.23e-31 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2640 - - gmx:102670430 167.933