Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2631 ATGGCTAAGTGCTTCTCGTGCCTTCTCTCTTGGTTTATGTTCTTTTTGCTTGTGCTGCTACAGGTACAAACGGGGAGTGGGTCAAATGCAACATCGATGGGTGTGATAAAGCTGAGAGTAGGGGTACCCAAGACAGATGGTTTCCCCGAATTTGTGAACGTAGTTTGGGACTCTCATGAAAAAAAGTACAACGTATCTGGATTTTGCATGGATGTTTTCAATGCCGTTGTAAACCTCTTACCTTTCAAGGTTTCTCTTGATGTTGAACCATATGCTATTGAATCAAGTGAGAGTGCTGGAACATACGATTCACTTGTCCAACAAATCCCAACAAAGTACGATGTTGTGGTAGGGGATGTAACAATCGTGGCAAACCGTTCAAAATACGTAGATTTCACACTACCATATACCGAATCTGGGGTTACAATGCTAGTCTCAGTTCAACATGGGAGGCACCAAACCATGTGGATTTTTGTTAGACCATTCAGCTGGGATCTTTGGTTGAGCATAATCTTGATCTCTACGTTCATAGGGGTTGTCATACTCATCATGGAAAGAAATGTAAATGCCCTGCCTGATCAAGAGGGTTCGCCAAATCGAAGAACGCTCAGTGCTGTAACCATCTTATGGTTTCCAATTTCACAAGCTATCCTTCCAGAAAGACAAGTAGTCGCCAAGAACTGCTCGAGATTTGTGTTGATGGTTTGGCTTCTATTGGCGTTCGTCCTCATGCAAAGTTACACCGCAAACTTGACATCTATATTGACATTGGATCAGCTACGACCCAGTTTTCTCAACGTGAATGATCTAATAAAAGGGGGTTATTATGTTGGATATCAAACCGGGTCTTTCGTTTATGATCTATTGGTACAGCAATTGAAGTTTAACCCATCCAAGCTGAGGGCATATAGCAACATTTCTGACTATCATCATGCTTTAAAAATTGGAAGCCAAGGTGGAGGTGTTGCTGCTATATTCGATGAAGTGCCCTGCCTTAAAGTCTACCTTCGAAAATTCGGATCCGATTACATCATGACTGGCCCCACCTATAGAACTGATGGCTTTGGTTTTGCATTCCCTTTGAACTCGAATCTCACGGCTCACTTTTCAAGAGCCATCTTGAATGTGACTGAAAGTGATTTAATGAATAAGATTGAGCAAAAATATTTTGGGACGAATGATATTGGAGGACAAGACGAGTCTACGCAAATGTCTTCCTCAACTCCAAGTCTCACTATTCATAGCTTTGCGGGGCTCTTCGTAATCACAAGCATTGCTACTTTATTGACGTTACTTGTCTCTGAAACTGTGATATGGCAAAGGCCCATTTTAATGGCTAAAGCATACAGTCAGAAGATATTGTTCCCTGGTACTCCACCTTCTACGGAAACACGTGTTCATCCAAGTCACCATTCACAAGAGGGAATAGAAGCCGTTTAA 1440 0.4208 MAKCFSCLLSWFMFFLLVLLQVQTGSGSNATSMGVIKLRVGVPKTDGFPEFVNVVWDSHEKKYNVSGFCMDVFNAVVNLLPFKVSLDVEPYAIESSESAGTYDSLVQQIPTKYDVVVGDVTIVANRSKYVDFTLPYTESGVTMLVSVQHGRHQTMWIFVRPFSWDLWLSIILISTFIGVVILIMERNVNALPDQEGSPNRRTLSAVTILWFPISQAILPERQVVAKNCSRFVLMVWLLLAFVLMQSYTANLTSILTLDQLRPSFLNVNDLIKGGYYVGYQTGSFVYDLLVQQLKFNPSKLRAYSNISDYHHALKIGSQGGGVAAIFDEVPCLKVYLRKFGSDYIMTGPTYRTDGFGFAFPLNSNLTAHFSRAILNVTESDLMNKIEQKYFGTNDIGGQDESTQMSSSTPSLTIHSFAGLFVITSIATLLTLLVSETVIWQRPILMAKAYSQKILFPGTPPSTETRVHPSHHSQEGIEAV* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2631 479 Gene3D - 155 296 - -
Apr9g2631 479 Gene3D - 341 397 - -
Apr9g2631 479 SMART GluR_14 37 392 IPR001320 GO:0015276|GO:0016020
Apr9g2631 479 MobiDBLite consensus disorder prediction 459 479 - -
Apr9g2631 479 CDD GluR_Plant 37 390 - -
Apr9g2631 479 PANTHER RECEPTOR 3.3, PUTATIVE-RELATED 1 476 - -
Apr9g2631 479 Pfam Bacterial extracellular solute-binding proteins, family 3 62 391 IPR001638 -
Apr9g2631 479 SUPERFAMILY Periplasmic binding protein-like II 12 392 - -
Apr9g2631 479 Pfam Ligand-gated ion channel 392 426 IPR001320 GO:0015276|GO:0016020
Apr9g2631 479 Gene3D - 31 154 - -
Apr9g2631 479 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2631 Apr-Chr9 33438807 33441227 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2631 37 452 Ion Channels AT5G11210 36.842 3.54e-90 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2631 K05387 - gmx:100811144 716.842