Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2628 ATGGGATCCTCCTTCAGTTGCTGCGGCTCAGAGAAGGTCGAAGAAGTGCCAACATCATTTGGTGCAGTTAACAATTCGTGGAAAATATTCACATACAAGGAGTTGCATGCAGCTACCAACGGATTTAGTGAAGATAATAAGCTTGGTGAAGGTGGGTTTGGAAGCGTCTATTGGGGAAGAACCAGTGATGGTCTTCAGATAGCAGTGAAGAAACTGAAATCAATGAACTCGAAGGCAGAGATGGAATTTGCAGTAGAAGTTGAAGTTCTTGGAAGGGTTAGGCACAAAAATTTACTGGGTCTTAGGGGCTACTTTGTTGGGGATGATCAACGGCTTATAGTCTACGATTACATGCCAAATCTTAGCCTGCTTTCTCATCTCCACGGCCAGTTTGCTGTTGAAGTGCAACTCAATTGGCAAAGGAGAATGAAGATTGCAATTGGCTCTGCAGAAGGCCTTCTGTACTTGCACCATGAGGTCACACCTCACATCATCCATAGGGACATCAAGGCAAGTAATGTACTTCTGAACTCAGAATTTGAACCTCTAGTAGCTGATTTTGGGTTTGCAAAGTTAATACCAGAAGGAGTTAGCCACATGACTACCCGTGTAAAGGGTACCTTGGGATACTTAGCACCTGAATATGCCATGTGGGGAAAGGTCTCTGAAAGTTGTGATGTCTATAGCTTTGGAATTCTTCTATTAGAGCTTGTAACTGGTAGAAAGCCCATAGAAAAGCTTCCAGGTGGGGTTAAGAGAACAATAACTGAGTGGGCTGAACCTTTGATAACCAAAGGAAAGTTCAGGGATTTGGTTGATCCAAAACTAAGAGGGAACTTTGATGAAAATCAAGTCAAACAAGCAATCAATGTGGCTGCTCTTTGTGTACAAAGTGAGCCTGAGAAGCGACCAAACATGAAGCAAGTGGTTAACCTTCTTAAAGGATATGAATCTGATGGCAAAGTGACGACAATGAGGATAGATAGTATCAAGTATAATGAAGAACTATTGGCACTTGACCAACCTAGCGAAGATGATGATGAGGGAACCTCTAGCTACGGTGTTTTCAGTGCCATTGAGGTTCAAAAGCTATGA 1095 0.4274 MGSSFSCCGSEKVEEVPTSFGAVNNSWKIFTYKELHAATNGFSEDNKLGEGGFGSVYWGRTSDGLQIAVKKLKSMNSKAEMEFAVEVEVLGRVRHKNLLGLRGYFVGDDQRLIVYDYMPNLSLLSHLHGQFAVEVQLNWQRRMKIAIGSAEGLLYLHHEVTPHIIHRDIKASNVLLNSEFEPLVADFGFAKLIPEGVSHMTTRVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLELVTGRKPIEKLPGGVKRTITEWAEPLITKGKFRDLVDPKLRGNFDENQVKQAINVAALCVQSEPEKRPNMKQVVNLLKGYESDGKVTTMRIDSIKYNEELLALDQPSEDDDEGTSSYGVFSAIEVQKL* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2628 364 SUPERFAMILY Protein kinase-like (PK-like) 25 317 IPR011009 -
Apr9g2628 364 PANTHER OS01G0750732 PROTEIN 1 363 - -
Apr9g2628 364 ProSitePatterns Serine/Threonine protein kinases active-site signature. 164 176 IPR008271 GO:0004672|GO:0006468
Apr9g2628 364 Gene3D Transferase(Phosphotransferase) domain 1 118 334 - -
Apr9g2628 364 PANTHER PTI1-LIKE TYROSINE-PROTEIN KINASE 1 363 - -
Apr9g2628 364 ProSitePatterns Protein kinases ATP-binding region signature. 48 71 IPR017441 GO:0005524
Apr9g2628 364 CDD STKc_IRAK 48 315 - -
Apr9g2628 364 Gene3D Phosphorylase Kinase; domain 1 15 117 - -
Apr9g2628 364 SMART serkin_6 42 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g2628 364 ProSiteProfiles Protein kinase domain profile. 42 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g2628 364 Pfam Protein kinase domain 43 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2628 Apr-Chr9 33408760 33410924 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2628 30 339 Trihelix Transcription Factor Family AT1G70460 47.040 9.81e-95 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Apr9g2628 Pkinase 1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2628 - - gmx:100783365 678.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2628 9 33408760 33410924 Apr9g2628 9 33408760 33410924 ECH