Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2627 ATGGTACTTCCTTCCCCTTCTAGAATACTAATTGGCCTCTCCTTAGACCCAGATGACAGCAAGGAACTTCTCTCATGGGCAATAACAGTTCTAGCCAATCCAAATGACACCATTGTGGCCGTGCATGTTCTTGTTGCTGAGGATAAGAAGAAGCGTGTCTCAGTCAGAAGAAGGCAATCGCAACTTAGGCAGGCAAAGGCATACGTTATATCTGTGCTTGGAGAATTTGCACAGACCTGTTGGTCTAAGCAGGTTAATTTGGAGGCGAGGGTGGCACTCAATTCCACAGTTGGTGGAGGTTTAGTGGAGGAAGTTAAGTCTATCTCTGCTGACTTTCTTCTCCTTCGTGGCTCAAGAAACCGAGCAAAGAAAAGTGGAAGTTCTAAAGGAATTTCCAAATATTGCTTTGAGCATGCACCTGAAAGCTGTACCATGGTCTCAGTTGGGAGGCGTTCAAAGGTTGATCATCAAAGTGCCAATTCAAACTCAACACATTGTGAAGGAAACAAGACACAGAACCATTCACCAAGAACTGTTCTAGATGGACTTGAGGGACAATCCAACAGCACAGAAGATGACACCTTTAGCACTAGGATCTCTAGCACCACATATACCCCGTCATTGGATTCTAAGTCTAAGCACAGATCCAAAAGAAGAAAACCACAGTTCCCACTCAGTTTCATAGTCTCATTCCTTGCTTCACCATTTAGAAGGAAAAACTTTAGCATGTCCAAAAATGATAAGCGCCAGCCTTTGTTGAAGTGCTTTAGCTATGAACAGATAACCAATGCCACCAACGACTTCCACCAAGATAATTTGGTTGGACGAGGTGGGTACTCCGAAGTATACAAAGGTGATCTGTCTGATGGACGAACCATAGCTGTGAAGAGGTTGGCGAAGGACAACAAGGATCCTAACAAGGAAAAAGAGTTCCTTATGGAGTTGGGTGTTATTGGACATGTTTGCCATCCTAATACTGCAACTTTAGTGGGCTGTTGCATTGAAAATGGGCTATATCTGATTTTCAATTACTCTCAAAATGGAAATTTGGCAACTGCATTGCATGGTAAAGCAGGGAATTCCCTTGACTGGCCAATCAGATACAAAATTGCTATTGGTGTTGCAAGGGGTCTCCATTATCTTCATAAATGTTGCAAACACCGAATAATTCATCGTGACATAAAAGCCTCTAATGTTCTTCTGGGTCCCGATTATGAACCACAGATTACCGACTTTGGGCTTGCAAAGTGGCTTCCTAACAAGTGGACTCACCATGCTGTGATCCCCGTAGAGGGCACATTTGGATACTTAGCGCCAGAGTACTTTATGCATGGAATTGTGGATGAGAAAACAGATGTTTTTGCTTTTGGGGTTCTACTTTTGGAGATTGTAACGGGACGCAGACCTGTTGATTCATCAAAGCAAAACCTTCTCCTATGGGCCAAGCCTCTGATGGAATCAAGTAATATTGCTGAGCTAGCTGATCCAAAATTAGAAGGTAAATATGATGAAGAGCAACTCTATAGGGTAGTGCTAACGGCTTCATACTGTGTGAGACAAACTGCCACGTGGCGTCCCCCAATGAGTGAGGTGCTAGAGCTGCTAACAAGTGGCCAAGACAAAGAGGTTGGAAAGAGCTGGAGGATCCCAAAGTTCACTTCCGATGAATTGGATGATTACTCTATGGTTTTCGGATATGATGTCCCCTCGGACATATCTTTGGAGGACTATTTGTAA 1737 0.4364 MVLPSPSRILIGLSLDPDDSKELLSWAITVLANPNDTIVAVHVLVAEDKKKRVSVRRRQSQLRQAKAYVISVLGEFAQTCWSKQVNLEARVALNSTVGGGLVEEVKSISADFLLLRGSRNRAKKSGSSKGISKYCFEHAPESCTMVSVGRRSKVDHQSANSNSTHCEGNKTQNHSPRTVLDGLEGQSNSTEDDTFSTRISSTTYTPSLDSKSKHRSKRRKPQFPLSFIVSFLASPFRRKNFSMSKNDKRQPLLKCFSYEQITNATNDFHQDNLVGRGGYSEVYKGDLSDGRTIAVKRLAKDNKDPNKEKEFLMELGVIGHVCHPNTATLVGCCIENGLYLIFNYSQNGNLATALHGKAGNSLDWPIRYKIAIGVARGLHYLHKCCKHRIIHRDIKASNVLLGPDYEPQITDFGLAKWLPNKWTHHAVIPVEGTFGYLAPEYFMHGIVDEKTDVFAFGVLLLEIVTGRRPVDSSKQNLLLWAKPLMESSNIAELADPKLEGKYDEEQLYRVVLTASYCVRQTATWRPPMSEVLELLTSGQDKEVGKSWRIPKFTSDELDDYSMVFGYDVPSDISLEDYL* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2627 578 ProSitePatterns Protein kinases ATP-binding region signature. 274 296 IPR017441 GO:0005524
Apr9g2627 578 Pfam Universal stress protein family 8 146 IPR006016 -
Apr9g2627 578 PANTHER OS08G0249100 PROTEIN 7 568 - -
Apr9g2627 578 CDD USP_Like 8 146 - -
Apr9g2627 578 ProSitePatterns Serine/Threonine protein kinases active-site signature. 389 401 IPR008271 GO:0004672|GO:0006468
Apr9g2627 578 Gene3D Phosphorylase Kinase; domain 1 231 344 - -
Apr9g2627 578 PANTHER OS08G0249100 PROTEIN 7 568 - -
Apr9g2627 578 Pfam Protein kinase domain 268 492 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g2627 578 SMART serkin_6 268 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g2627 578 Gene3D HUPs 4 148 IPR014729 -
Apr9g2627 578 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 7 146 - -
Apr9g2627 578 SUPERFAMILY Protein kinase-like (PK-like) 242 535 IPR011009 -
Apr9g2627 578 ProSiteProfiles Protein kinase domain profile. 268 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g2627 578 MobiDBLite consensus disorder prediction 151 209 - -
Apr9g2627 578 Gene3D Transferase(Phosphotransferase) domain 1 346 550 - -
Apr9g2627 578 MobiDBLite consensus disorder prediction 149 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2627 Apr-Chr9 33402431 33405867 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2627 256 574 Trihelix Transcription Factor Family AT1G70460 40.950 1.23e-75 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Apr9g2627 Pkinase 4.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2627 - - ccaj:109809416 1029.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2627 9 33402431 33405867 Apr9g2627 9 33402431 33405867 ECH