Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2626 ATGGGAATTGAAAGAGGAGGCCTCAAGGGCTTTAGGACCGGCTGGACCGTACCGCCCAAGCCATGTGATTCTTGCAAGCTGGCTTCCGCGGCTCTCTTCTGCCGCCCCGATTCTGCGTTTCTCTGCATCGCTTGCGACTCCAAGATTCACTGCGCCAATAAGCTCGCTTCGCGCCACGAGCGCGTCTGGATGTGTGAGGTCTGCGAGCAAGCACCCGCAGCTGTCACGTGCAAGGCAGACGCCGCAGCCCTCTGCGTCACGTGCGACTCTGACATCCACTCCGCCAACCCCCTCGCTCGCCGCCACGAGCGCGTCCCCGTCGAGCCCTTCCTCGACTCCGCCGACTCCATCGTCAAAGCCTCCGTCGCCGCCTCCTTCGGCTTCATCGTCCCCTCCGATGACGCCGTCGCTTCCGACGGCTTCGCCCACGACGACGCCGATGCCGCGGCGTGGCTCATTCCCAACCCAGATTTCGGGTCCAAGCTCATGGACGCTCCGGATATCAAGTCCAAGGAGCTTTTCTTCGCGGAAATGGATCCGTTTCTGGATTTTGATTACTCAAACTCCTTCCAGAACAACCACAACCACAACAGCGCCGGAAACGACAGCGTCGTTCCGGTTCAAACCAAACCCGCTCCTGCTCTGGCTCCTCTGATAAATCACCAATCAGAGAGTTGCTTCGACATCGATTTTTGCAGATCGAAGCTATCTTCATTTAACTACCCATCGCAGTCTCTCAGCCAAAGCGTCTCGTCGTCTTCTCTTGATGTTGGAGTGGTGCCAGACGGGAACACGGTGTCAGAGATATCGTACTCTATGGGTCGTAACGGTTCGGATGTATCCGGCGGTAGCAGCGGGCAAGGGGCCACGCAGTTGTGTGGGATGGATCGAGAAGCAAGGGTGCTGAGATACAGAGAGAAGAGGAAGAACAGAAAGTTCGAGAAGACCATTCGATACGCTTCGCGAAAGGCTTACGCAGAAACCCGGCCCAGGATTAAGGGCCGGTTCGCAAAGCGAACCGAAATTGACTCCGATGTGGAGCGTCTCTATAGCCCTGCCGCCGCCGCCGCCGCTCTCATGCTCGACACTCCGTACGGCGTGGTGCCATCGTTTTAG 1116 0.5797 MGIERGGLKGFRTGWTVPPKPCDSCKLASAALFCRPDSAFLCIACDSKIHCANKLASRHERVWMCEVCEQAPAAVTCKADAAALCVTCDSDIHSANPLARRHERVPVEPFLDSADSIVKASVAASFGFIVPSDDAVASDGFAHDDADAAAWLIPNPDFGSKLMDAPDIKSKELFFAEMDPFLDFDYSNSFQNNHNHNSAGNDSVVPVQTKPAPALAPLINHQSESCFDIDFCRSKLSSFNYPSQSLSQSVSSSSLDVGVVPDGNTVSEISYSMGRNGSDVSGGSSGQGATQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEIDSDVERLYSPAAAAAALMLDTPYGVVPSF* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2626 371 ProSiteProfiles Zinc finger B-box type profile. 60 107 IPR000315 GO:0008270
Apr9g2626 371 ProSiteProfiles CCT domain profile. 297 339 IPR010402 GO:0005515
Apr9g2626 371 Pfam B-box zinc finger 62 107 IPR000315 GO:0008270
Apr9g2626 371 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 8 371 - -
Apr9g2626 371 CDD Bbox1_BBX-like 65 107 - -
Apr9g2626 371 SMART bboxneu5 65 107 IPR000315 GO:0008270
Apr9g2626 371 SMART bboxneu5 17 64 IPR000315 GO:0008270
Apr9g2626 371 CDD Bbox1_BBX-like 21 64 - -
Apr9g2626 371 ProSiteProfiles Zinc finger B-box type profile. 17 64 IPR000315 GO:0008270
Apr9g2626 371 Pfam CCT motif 297 339 IPR010402 GO:0005515
Apr9g2626 371 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 8 371 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2626 Apr-Chr9 33395269 33396976 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2626 1 371 C2C2-CO-like Transcription Factor Family AT5G57660 56.430 1.62e-126 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Apr9g2626 zf-B_box 9.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2626 - - gmx:100805693 607.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2626 9 33395269 33396976 Apr9g2626 9 33395269 33396976 ECH