Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2618 ATGGGTAGAGCTCCATGCTGTGACAAGGCCAACGTGAAGAAAGGACCTTGGTCTCCCGAAGAGGATGCTGCACTAAAAGCCTACATTGAAAAGAATGGAACTGGTGGCAATTGGATTGCTCTTCCTCAGAAAATTGGGCTCAAGAGATGTGGAAAGAGTTGCAGACTTAGGTGGTTAAATTACTTGAGACCTAACATCAAACATGGTGGATTTACTGAAGAAGAAGACAACATCATCTGCAGTCTTTACATTAGCATTGGTAGCAGGTGGTCCATTATTGCTGCTCAGTTGCCTGGAAGGACAGATAACGACATCAAGAACTATTGGAACACTAGATTGAAGAAGAAATTGCTAGGGAGGCGCAAACAATCTAACTTCAACACAAAAGACACAAACGGAATAGAGGAGAACTCTTATTCAAATGCCCTAAGCAGTTCAGCCCTTGAAAGACTCCAACTTCACATGCAACTTCAAAGCCTTCAAAACCCTCTCTCTTTCTACAATAACCCTGCACTGTGGCCCAAGTTGCATCCCTTTCAAGAAAAGATGATCCAGAATCTGCAATCTTTGAATGATGGCTCTAACCCTGTGATGCAAAATGCTTTGCCTTCACCACATGTTGAACAAGATGGTGCAAAGATTAATAACCCACAGGTTGCTGATATTTTGGATAATATTCCTTTGAATAACAGAGAAGTTCCCTTTGTTGCTTCTGGGAATAATAATCCAATGCACTCAAGTCTTACTCCAAGAGCTGAGGCTGTTGAGCAGACTAATAATGTGGGACTTCAGCAACTTGGTGCACTGCAAACTGAACTAGATGACATTCTCAACAACAGAACAATGGGTTTACTGGAAGATCATCATATGGCTGAATTTGATTGTTTCAGAGAGATGAATGGCTCAAAGGACAACTTAGTTTGGTGGTCCAATGATTCTGATACCAAATCAGCATCCTCAAATTCCTGGGATTCATCAACTACTCCAGCTCTTCTAACACAAGGGATGTTCCAAGATTATGAACTGGGCTACAGTCTGTAG 1041 0.4188 MGRAPCCDKANVKKGPWSPEEDAALKAYIEKNGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGRRKQSNFNTKDTNGIEENSYSNALSSSALERLQLHMQLQSLQNPLSFYNNPALWPKLHPFQEKMIQNLQSLNDGSNPVMQNALPSPHVEQDGAKINNPQVADILDNIPLNNREVPFVASGNNNPMHSSLTPRAEAVEQTNNVGLQQLGALQTELDDILNNRTMGLLEDHHMAEFDCFREMNGSKDNLVWWSNDSDTKSASSNSWDSSTTPALLTQGMFQDYELGYSL* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2618 346 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Apr9g2618 346 CDD SANT 71 113 IPR001005 -
Apr9g2618 346 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Apr9g2618 346 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Apr9g2618 346 Gene3D - 70 141 - -
Apr9g2618 346 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Apr9g2618 346 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Apr9g2618 346 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Apr9g2618 346 CDD SANT 16 62 IPR001005 -
Apr9g2618 346 PANTHER OS09G0431300 PROTEIN 1 310 - -
Apr9g2618 346 PANTHER OS09G0431300 PROTEIN 1 310 - -
Apr9g2618 346 SMART sant 67 115 IPR001005 -
Apr9g2618 346 SMART sant 13 64 IPR001005 -
Apr9g2618 346 Gene3D - 7 68 - -
Apr9g2618 346 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2618 Apr-Chr9 33330291 33331693 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2618 1 198 MYB Transcription Factor Family AT5G57620 74.757 6.25e-103 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr9g2618 Myb_DNA-binding 1.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2618 K09422 - gmx:778083 587.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2618 9 33330291 33331693 Apr9g2618 9 33330291 33331693 ECH