Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2607 ATGAGTTTCCATCCTAATACTTCTCTTCATCTAAGCCAACCAGATGAGAATCATCTCAATCTAGCACTTCTCCTTGAGCCATCTTCATCTTCACCTTCACCTATTAGTCCCATTGAGCCTCGAATATTCTCATGCAACTATTGCCAGAGAAAGTTTTACAGCTCTCAAGCCCTTGGGGGCCACCAAAATGCTCACAAGTTGGAAAGGACACTGGCCAAGAAGAGCAGGGAACTCAATTCAACCATGCAACCTTATGGAGGACCTGAGCAGCGATCAAACTTCACTGCTTCACACCCTTTTAGTCATGCTCTTGGGGTCCTTGATAGCCAAGGACAAAGCTTGAGGCTTGGTGGAAGGAAAGACTTTAGTTATGGTTCCAAGGAAGGGGTGGCTTCTTGGTCAAGGGGTTATACTTCTGAACATGTTCAGGAGGATATTAGCCAACTTGACTTGTCGTTAAGATTTCTCATAATAAATGAATTATTTTTTTTTGTAAAAAAAATGCAATTTGTTCTGTAA 519 0.42 MSFHPNTSLHLSQPDENHLNLALLLEPSSSSPSPISPIEPRIFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSRELNSTMQPYGGPEQRSNFTASHPFSHALGVLDSQGQSLRLGGRKDFSYGSKEGVASWSRGYTSEHVQEDISQLDLSLRFLIINELFFFVKKMQFVL* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2607 172 ProSiteProfiles Zinc finger C2H2 type domain profile. 43 70 IPR013087 -
Apr9g2607 172 ProSitePatterns Zinc finger C2H2 type domain signature. 45 65 IPR013087 -
Apr9g2607 172 PANTHER ZINC FINGER PROTEIN JAGGED 1 154 IPR045320 GO:0003700
Apr9g2607 172 Gene3D Classic Zinc Finger 36 95 - -
Apr9g2607 172 SUPERFAMILY beta-beta-alpha zinc fingers 40 70 IPR036236 -
Apr9g2607 172 PANTHER BNAC02G44440D PROTEIN 1 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2607 Apr-Chr9 33239822 33245845 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2607 1 155 C2H2 Transcription Factor Family AT5G57520 47.977 6.55e-29 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr9g2607 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2607 - - vra:106768043 224.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2607 9 33239822 33245845 Apr9g2607 9 33239822 33245845 ECH