Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2581 ATGAGGTATATTCGGAGCAACAGCTTGAAGAGGCTCTTCTCCTTGAGAAGACGAGGTTCAGGGGAACATATTTTGAGTCCTAAAGTTTCAACTGGTGAAGAAAACGATGAGAGCTTGGTGATTCTTCCGCACGAAGAACCTTCTGAAAGACCCACTTGGAAATGTTTCTCTTATGAAGAGTTGTTTGATGCAACTAGTGGCTTCAGCTCAGAAAATTTGGTTGGAAAAGGAGGGTATGCAGAGGTTTACAAGGGAACACTGAATGATGGTGAGGAAATTGCAGTGAAGAGGCTCACAAGAACTTCTAGGGATGAGAGGAAGGAGAAGGAGTTTTTAACAGAGATTGGTACAATTGGTCATGTTCACCATATCAATGTTTTGCCTCTACTGGGGTGTTGTATTGACAATGGACTTTACCTTGTTTTTGAGCTATCTTCTAGAGGCTCAGTTGCCACTCTTCTTCATGATGAAAAGTTGCCTCCTTTAGATTGGAAAACAAGGCATAAAATAGCTATTGGAACTGCACGTGGCCTTCACTACTTGCACAAAGGTTGCAAGAGGAGGATTATCCACCGGGACATCAAGGCCTCAAACATTCTATTGACCAAAGATTTGGAACCACAGATATCTGATTTTGGACTAGCAAAATGGCTTCCATCTCAATGGACTCATCATTCAATTGCTCCAATAGAAGGGACATTTGGACATTTGGCCCCAGAGTACTATTTGCATGGTGTTGTGGATGAGAAGACAGATGTATTTGCCTTTGGTGTGTTCTTGCTAGAAGTTATCTCTGGAAGGAAACCAGTGGATGGGTCTCACCAAAGCTTACATAGCTGGGCTAAACCAATTTTGAACAAGGGTGAGATAGAAGAGTTGGTAGATCCAAGGCTTGAAGGGGCTTATGATATTACACAATTAAAAGGACTTGCCTTTGCTGCCTCACTGTGCATTCGGGCATCTTCAACTTGGCGACCTACCATGAGTGAGGTATTAGAGATAATGGAGGAGGGAAAGATGGATATAGAGAAGTGGAAAATGCCAGAGGAAGAAGAGGAGCAAGAGGAAGAGTTCTGGGGTTTTGAGGATCTTGAATATGAATATGACAGTTCTTTTTCAATGTCTTTACTTGACTCCATTGGAAGTACTTAG 1152 0.4236 MRYIRSNSLKRLFSLRRRGSGEHILSPKVSTGEENDESLVILPHEEPSERPTWKCFSYEELFDATSGFSSENLVGKGGYAEVYKGTLNDGEEIAVKRLTRTSRDERKEKEFLTEIGTIGHVHHINVLPLLGCCIDNGLYLVFELSSRGSVATLLHDEKLPPLDWKTRHKIAIGTARGLHYLHKGCKRRIIHRDIKASNILLTKDLEPQISDFGLAKWLPSQWTHHSIAPIEGTFGHLAPEYYLHGVVDEKTDVFAFGVFLLEVISGRKPVDGSHQSLHSWAKPILNKGEIEELVDPRLEGAYDITQLKGLAFAASLCIRASSTWRPTMSEVLEIMEEGKMDIEKWKMPEEEEEQEEEFWGFEDLEYEYDSSFSMSLLDSIGST* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2581 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Apr9g2581 383 Gene3D Phosphorylase Kinase; domain 1 42 144 - -
Apr9g2581 383 SMART serkin_6 68 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g2581 383 PANTHER OS04G0654600 PROTEIN 35 365 - -
Apr9g2581 383 PANTHER OS08G0249100 PROTEIN 35 365 - -
Apr9g2581 383 ProSiteProfiles Protein kinase domain profile. 68 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g2581 383 SUPERFAMILY Protein kinase-like (PK-like) 48 335 IPR011009 -
Apr9g2581 383 Pfam Protein tyrosine and serine/threonine kinase 71 276 IPR001245 GO:0004672|GO:0006468
Apr9g2581 383 ProSitePatterns Protein kinases ATP-binding region signature. 74 96 IPR017441 GO:0005524
Apr9g2581 383 Gene3D Transferase(Phosphotransferase) domain 1 146 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2581 Apr-Chr9 33025125 33029482 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2581 56 340 Trihelix Transcription Factor Family AT1G70460 45.424 1.07e-72 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Apr9g2581 PK_Tyr_Ser-Thr 6.7e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2581 - - gmx:100305398 689.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2581 9 33025125 33029482 Apr9g2581 9 33025125 33029482 ECH
Apr9g2581 9 33025125 33029482 Apr1g2289 1 32419850 32423081 PCT