Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2578 ATGGAGTGGGACAGCAATTCCGATCTGAGCGGTGACGAAGAGGAAGGATTCCTACTCAACGATGCAGATTCCCCTCTCCCTTTTCCCTTTCCCGTTCAAAACCTTCTCCAAACGGCACCGTGTGGCTTCGTCGTCACCGATGCGCTTGAACCTGACCACCCTATTATTTACGTCAACACCGTTTTCGAGATGGTTACCGGTTACCGGGCCGAGGACGTTCTCGGTCGCAATTGCCGTTTCTTGCAGTGTCGAGGTCCTTTTGCTAAGAGAAGGCATCCATTGGTGGACTCAACTGTAGTGTCAGAAATTAGAAGATGTCTTGAAGAGGGGATTGAATTCCAAGGTGAGTTGCTGAACTTTAGGAAAGATGGATCTCCTCTGATGAACAGATTGCGGCTGACACCTATTTATGGAGATGATGAGACTATAACACATGTCATTGGAATCCAGTTCTTCACAGAGGCAAACATTGATCTTGGTCCTGTTCCGGGTTCTACAATTAAGGAATCTGCTAAATCATCTGATCGATTTCATTCTGTGCTTTCTCCATTGCGTCCTGTTCCAGCGGGGGACCGGAATGTATCACGAGGAGTTTGTGGGATATTGCAATTGAGTGATGAGGTACTGTCTCTCAAGATACTTGCTCGATTAACTCCTAGAGATATTGCATCAGTTAGCTCAGTCAGTAGAAGATTGTATGAGCTGACAAAAAATGAAGATCTCTGGAGAATGGTGTGCCAAAATGCGTGGGGCAGTGAGACTACAAGTGTTTTAGAGACGGTGCCTGGTGCAAGGAGACTTGGATGGGGTCGGCTAGCAAGGGAATTGACCACTCTTGAAGCAGCCACATGGAGGAAGTTGACTGTTGGAGGTGCTGTTGAACCCTCGCGCTGTAATTTTAGTGCTTGTGCTGTTGGTAATAGAGTTGTCCTATTTGGTGGTGAAGGGGTTAACATGCAACCTATGAATGACACCTTTGTATTGGATCTCAATTCTAGTAATCCTGAGTGGCAACACGTCCAGGTAAGCTCTCCTCCTCCTGGCCGTTGGGGCCACACACTTTCATGTGTTAATGGTTCTCATTTGGTTGTATTTGGAGGCTGTGGAAGGCAGGGGTTGCTGAACGATGTGTTTGTTCTGGACCTGGATGCAAAGCCTCCAACATGGCGTGAAATTTCTGGATTGGCACCTCCACTTCCTAGATCATGGCATAGCTCTTGTACTCTTGATGGCACTAAGTTGATAGTTTCTGGGGGATGTGCAGATTCTGGAGTACTCCTGAGTGACACTTTCCTCCTTGATTTGTCAATGGAGAAGCCTGTTTGGAGAGAGATACCAGTTGCATGGACCCCACCTTCTCGTCTGGGCCACACATTGTCTGTTTATGGTGGTAGGAAAATACTTATGTTTGGGGGTCTGGCCAAGAGTGGGCCCCTGCGATTTCGTTCCAGTGATGTATTCACAATGGATTTAAGTGAGGAGGAACCTTGTTGGAGATGTGTAACAGGGAGTGGCATGCCTGGTGCTGGAAATCCTGGGGGCATAGCTCCTCCTCCTAGACTTGATCATGTTGCTGTTAGTCTTCCAGGTGGAAGAATTCTGATATTTGGTGGGTCTGTTGCAGGTCTTCACTCTGCCTCTCAGCTATACATTCTTGATCCAACTGATGAGAAGCCTACATGGAGAATCCTAAATGTACCCGGTCACCCTCCAAGATTTGCTTGGGGACATAGCACGTGTGTTGTTGGAGGAACAAGAGCTATTGTACTGGGTGGTCAAACTGGGGAGGAGTGGATGCTAAGCGAGCTCCATGAACTTTCTCTGGCGAGTTCTGTCATCTAA 1842 0.4767 MEWDSNSDLSGDEEEGFLLNDADSPLPFPFPVQNLLQTAPCGFVVTDALEPDHPIIYVNTVFEMVTGYRAEDVLGRNCRFLQCRGPFAKRRHPLVDSTVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLTPIYGDDETITHVIGIQFFTEANIDLGPVPGSTIKESAKSSDRFHSVLSPLRPVPAGDRNVSRGVCGILQLSDEVLSLKILARLTPRDIASVSSVSRRLYELTKNEDLWRMVCQNAWGSETTSVLETVPGARRLGWGRLARELTTLEAATWRKLTVGGAVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVQVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVAWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQLYILDPTDEKPTWRILNVPGHPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLSELHELSLASSVI* 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2578 613 Pfam Galactose oxidase, central domain 297 347 - -
Apr9g2578 613 Pfam Kelch motif 521 568 IPR011498 GO:0005515
Apr9g2578 613 Pfam Kelch motif 454 505 IPR011498 GO:0005515
Apr9g2578 613 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 1 612 - -
Apr9g2578 613 Pfam F-box-like 209 247 IPR001810 GO:0005515
Apr9g2578 613 CDD PAS 39 149 IPR000014 -
Apr9g2578 613 Gene3D - 275 500 IPR015915 GO:0005515
Apr9g2578 613 Gene3D - 501 612 IPR015915 GO:0005515
Apr9g2578 613 Pfam Galactose oxidase, central domain 361 408 - -
Apr9g2578 613 TIGRFAM sensory_box: PAS domain S-box protein 35 149 IPR000014 -
Apr9g2578 613 ProSiteProfiles PAS repeat profile. 32 110 IPR000014 -
Apr9g2578 613 PANTHER ADAGIO PROTEIN 1-LIKE 1 612 - -
Apr9g2578 613 Gene3D PAS domain 25 161 - -
Apr9g2578 613 SUPERFAMILY PYP-like sensor domain (PAS domain) 35 150 IPR035965 -
Apr9g2578 613 Pfam PAS domain 40 150 IPR000014 -
Apr9g2578 613 Gene3D - 197 245 - -
Apr9g2578 613 SUPERFAMILY F-box domain 191 262 IPR036047 GO:0005515
Apr9g2578 613 SUPERFAMILY Kelch motif 442 607 IPR015915 GO:0005515
Apr9g2578 613 SUPERFAMILY Kelch motif 282 501 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2578 Apr-Chr9 32998635 33004741 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2578 36 151 AGC Kinase Gene Family AT5G58140 32.759 4.45e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2578 K12115 - gmx:100301887 1174.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2578 9 32998635 33004741 Apr9g2578 9 32998635 33004741 ECH