Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2555 ATGCGGGATAGTGAGAAGCAGCTAAACAGTAGAGGATCTAAAAAATCCAGTCATTTGAAGGCACGCACGGAGTGTAAAAGGAAGAAGCATAAACTGAAAGTGGAATCAAAATCTCACACGAAAAATGTTGGCACTAACATATCAAAGAAGAGAGTTATCGACTCTTCCCTCAAGGCTAAGGGGCCACGTAAGGATTCTTCAGATAAGACATTGATTGCTGGACAAAATTTGTCTAAAATCCACAGAAAGTCTTCACAGAAGCCATCCTCAAAGTTACAAGGCAATAAATCTTCTCATAGTTCTAGAAAAGAGGAGAAAGATGCTGATGGGGTGGTAAATCTTCAAAAAATGAAGAGAAAGAGAAAGAGAAAAAAGAAAAGGCAAAGGAATAATGCAGATCTTGATGATGCTTCACGCCTGCAGCGGAGAACAAGGTACCTCTTGATCAAAATGAAGCTAGAGCAGAACCTTATTGATGCTTACTCTGGAGAAGGTTGGAAAGGTCAGAGTCGAGAAAAGATTAGGCCAGAAAAGGAGCTACAAAGAGCACGGAAGCAGATTTTAAAATGTAAACTTGGTATTCGTGATGCCATTCGCCAGTTGGATTCTCTCAGTTCATTGAGTAGCATTGAAGACTCTACTCCTGATGGATCTGTTTATCATGAACATATATTCTGTGCAAAGTGCAAGACGCGTGAAGAACTTCCAGACAATGATATTATACTATGTGATGGTACATGCAATCGTGCTTTTCACCAAAAATGTCTTGATCCTCCTTTAGACACTGAAAATATTCCTCCTGGGGAGCAGGGCTGGTTTTGTAAATTTTGTGAATGTAAGATGCAAATACTAGAGGCAATGAATGCCCATCTTGGAACTCACTTCTCCTTGCACAGTACTTGGCAGGATGTATTCAAAGAAGAAGCTGCTATACCTGATGGTGATACCATGTTACTGAATCCTGAAGAAGAGTGGCCATCAGATGATTCTGAAGATGGTGATTATAATCCAGAGAGGAAAGAAGACAGCCAGAATATCAACACAGAAGGAACTGATGATGATGCATCTGATGATTTAAGCAGTTCTACCAGTCTGTGTTATTCTGATGGTGAATGTTCTCCTGTAGATGGTGTCAGTCATGAATATTTTTCTGTCAATAGCAGCATAGATTCTGATGAGTCTGAGGAAAAAGCCTGTGGTCGTAGGCAGCGAAAAGCCGTTGACTACAAGAAACTCTATGATGAAATGTTTGGAAAGGATGCGCCTACATGTGAACAATTGAGTGAAGATGAAGACTGGGGTCCTGGCAAAAGAAAGCGAAGAGAAAAGGAGTCTGATGCTGTTGATTCTCTTATGACTTTGCATGAAAGTGAGAATAAATGCCCCAATAATGAGGAAAACAATATGACAAGAAAGGCTTCTTCAAGCATCAATATAAAAAGGCCTTGTTTTAGGATTCCACGTGATGCAGTTGAGAAGCTTCGCCAAGTTTTTGCAGAGAATGAACTTCCTCCAAGATCTATGAAGGAGGGTCTTTCAAAAGAGTTGGGACTTGACACTGAGAAGGTCAGCAAATGGTTCAAAAATGCTCGTTACTTAGCACTTAAAAACAGAAAGCAATCAGAAGGAGCCGATCAGCTTCAGAGTATCACTTCTAGGAAGAACTCAAGAATGCAAAATCAGGAGAATGCTGATCTTCTGAAACCAAAGAGCTTAAAAATTACTGTTAGACATTCCCTGAAGGATGTTAAAAATGTCACTGGAAGAAAGAAAATGAAGTCATCTAGCAGTTCTTTCAAGAAAAGACAACCAGATATATCTCCACCCCAGGGAGAAAATGTCAACAAGGACTTCGTGGAGATCAGTGATGATGTGAGTTTGAAGAAACTGTTGAAAGAAAAAAAGAGAATGGTAAATTTTACTTTTGAAGGAGACTCTCAGGCGGCAGAGTTGGAATTTGAAAGACTAAGCAAATTGAAGATTAAACTAGATATTATGAAGCAAAAATTAGCTGGATTTCAAAATTATAGAGGAAATGGTTCAAATGAACCCCAGTCAAATGAACCATCTATTGTATATGTACCCATAGCTGTGTTAAGGGAAAAGGTTGAATAA 2115 0.3929 MRDSEKQLNSRGSKKSSHLKARTECKRKKHKLKVESKSHTKNVGTNISKKRVIDSSLKAKGPRKDSSDKTLIAGQNLSKIHRKSSQKPSSKLQGNKSSHSSRKEEKDADGVVNLQKMKRKRKRKKKRQRNNADLDDASRLQRRTRYLLIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELQRARKQILKCKLGIRDAIRQLDSLSSLSSIEDSTPDGSVYHEHIFCAKCKTREELPDNDIILCDGTCNRAFHQKCLDPPLDTENIPPGEQGWFCKFCECKMQILEAMNAHLGTHFSLHSTWQDVFKEEAAIPDGDTMLLNPEEEWPSDDSEDGDYNPERKEDSQNINTEGTDDDASDDLSSSTSLCYSDGECSPVDGVSHEYFSVNSSIDSDESEEKACGRRQRKAVDYKKLYDEMFGKDAPTCEQLSEDEDWGPGKRKRREKESDAVDSLMTLHESENKCPNNEENNMTRKASSSINIKRPCFRIPRDAVEKLRQVFAENELPPRSMKEGLSKELGLDTEKVSKWFKNARYLALKNRKQSEGADQLQSITSRKNSRMQNQENADLLKPKSLKITVRHSLKDVKNVTGRKKMKSSSSSFKKRQPDISPPQGENVNKDFVEISDDVSLKKLLKEKKRMVNFTFEGDSQAAELEFERLSKLKIKLDIMKQKLAGFQNYRGNGSNEPQSNEPSIVYVPIAVLREKVE* 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2555 704 MobiDBLite consensus disorder prediction 422 453 - -
Apr9g2555 704 Gene3D - 479 546 - -
Apr9g2555 704 Pfam PHD-finger 225 280 IPR019787 -
Apr9g2555 704 MobiDBLite consensus disorder prediction 53 67 - -
Apr9g2555 704 MobiDBLite consensus disorder prediction 541 564 - -
Apr9g2555 704 CDD PHD_PRHA_like 225 277 IPR045876 -
Apr9g2555 704 MobiDBLite consensus disorder prediction 584 615 - -
Apr9g2555 704 MobiDBLite consensus disorder prediction 332 347 - -
Apr9g2555 704 MobiDBLite consensus disorder prediction 13 36 - -
Apr9g2555 704 SUPERFAMILY FYVE/PHD zinc finger 211 282 IPR011011 -
Apr9g2555 704 SMART PHD_3 225 278 IPR001965 -
Apr9g2555 704 ProSiteProfiles Zinc finger PHD-type profile. 223 280 IPR019787 -
Apr9g2555 704 Pfam Homeodomain 488 532 IPR001356 GO:0003677
Apr9g2555 704 SMART HOX_1 479 541 IPR001356 GO:0003677
Apr9g2555 704 MobiDBLite consensus disorder prediction 422 475 - -
Apr9g2555 704 ProSiteProfiles 'Homeobox' domain profile. 477 537 IPR001356 GO:0003677
Apr9g2555 704 PANTHER POLYCOMB PROTEIN PCL 6 679 - -
Apr9g2555 704 SUPERFAMILY Homeodomain-like 480 543 IPR009057 -
Apr9g2555 704 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 217 274 IPR013083 -
Apr9g2555 704 MobiDBLite consensus disorder prediction 316 363 - -
Apr9g2555 704 MobiDBLite consensus disorder prediction 69 96 - -
Apr9g2555 704 MobiDBLite consensus disorder prediction 539 564 - -
Apr9g2555 704 ProSitePatterns Zinc finger PHD-type signature. 226 277 IPR019786 -
Apr9g2555 704 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 6 679 - -
Apr9g2555 704 MobiDBLite consensus disorder prediction 1 137 - -
Apr9g2555 704 CDD homeodomain 480 541 IPR001356 GO:0003677
Apr9g2555 704 MobiDBLite consensus disorder prediction 97 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2555 Apr-Chr9 32751248 32757207 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2555 130 539 Homeobox Transcription Factor Family AT4G29940 56.974 2.67e-154 464
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Apr9g2555 Homeodomain 1.7e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2555 - - gmx:100817639 1080.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2555 9 32751248 32757207 Apr9g2555 9 32751248 32757207 ECH
Apr9g2555 9 32751248 32757207 Apr1g2327 1 32859662 32865515 PCT