Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2549 ATGGACAACATTGGTGAGGAGTACCAGCATTACTGGGAGACCAACATGTTTTTTCAAACCGAAGAGCTTGACAGCTGGGCAATGGAAGAAGCCTTTTCCGGGTACTATGATTCAAGCTCCCCAGATGGTGGAGCTTCATCGGTGGCATCAAAGAATATTGTCTCGGAGAGGAACAGGAGGAAGAAGCTGAACGAAAGGCTTTTTGCACTTAGAGCGGTGGTCCCAAACATTAGCAAGATGGATAAGGCTTCCATCATTAAGGATGCTATTGAGTACATCCAGCACTTGCATGAGCAAGAGAAGAGAATCCAAGCTGAGATTATGGATCTTGAATCTGGCAAGCTCAAAAACCCTACCCATGATTTCCACCAGGAGCTCCCTATTTTGCTCAGATCCAAGAAAAAGAGAACGGATAACCTATTTGATTCTATCAGTTCTAGAAATTCTCCAATTGAAATAATTGAGCTAAGGGTAAAATATATGGGAGAGAAAACGTTTGTGGTGAGCTTGACATGCAGCAAAAGGACAGACACGATGGTAAAACTGTGTGAGATGTTCGAATCTTTAAAGCTGAAGATTATCACAGCCAATATCACTTCTTTTTCAGGCACGCTTTTGAAGACAGTCTTCATCGAGGCAGAGGAGGAAGAGAAAGATGTTTTGCAGATTAAAATTCAGAGTGCCATTTCAGCTCTCAATGATCCTCAAAGCCAAACCATCTAA 723 0.4246 MDNIGEEYQHYWETNMFFQTEELDSWAMEEAFSGYYDSSSPDGGASSVASKNIVSERNRRKKLNERLFALRAVVPNISKMDKASIIKDAIEYIQHLHEQEKRIQAEIMDLESGKLKNPTHDFHQELPILLRSKKKRTDNLFDSISSRNSPIEIIELRVKYMGEKTFVVSLTCSKRTDTMVKLCEMFESLKLKIITANITSFSGTLLKTVFIEAEEEEKDVLQIKIQSAISALNDPQSQTI* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2549 240 PANTHER TRANSCRIPTION FACTOR BHLH35 1 235 - -
Apr9g2549 240 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 111 IPR036638 GO:0046983
Apr9g2549 240 Gene3D - 46 113 IPR036638 GO:0046983
Apr9g2549 240 SMART finulus 53 102 IPR011598 GO:0046983
Apr9g2549 240 Coils Coil 211 231 - -
Apr9g2549 240 Pfam Helix-loop-helix DNA-binding domain 54 97 IPR011598 GO:0046983
Apr9g2549 240 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 47 96 IPR011598 GO:0046983
Apr9g2549 240 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2549 Apr-Chr9 32716152 32721976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2549 2 212 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 61.395 2.14e-85 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr9g2549 HLH 4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2549 - - gmx:100817978 367.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2549 9 32716152 32721976 Apr9g2549 9 32716152 32721976 ECH
Apr9g2549 9 32716152 32721976 Apr1g2330 1 32907924 32913963 PCT