Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2542 ATGAGTTTCTCCAAGGGTTCTCCTTGCGGCGAGACGCAGCGTGATGTAGAGGTTGGGTCTCCCACTAGCTGCTCCGCTGGTTTTGATGACGGAGATTACTCCTCTGATCCATTTGACATTTCCAGAACAAAGAATGCTCCGGTTCAACGTCTCAGGCGTTGGAGGCAAGCAGCACTTGTGCTCAATGCTTCTCGCAGATTTCGTTACACCTTGGACTTGAAGAAAGAAGAAGAGAAGAAGCGAGTATTAAGAATTGTTATAGTGCATACACGGGCCATTCAAGCAGCATATCGATTCAAGGCAGCTGGAGAGCAAGTAAATGGGTTAGGAACTGTAAAACCTCCTTTGAGCTCTGCTGGAGAATTTTCTATTGGACAAGAACAACTTTCTTTAATTTCAAGGGAACGTGATACTACTGCTCTGCAAGAACATGGAGGGGTTGTAGGTTTATCACATTTGTTGAAAACCAATTTAGAGAAGGGAATTCAGGGTGATGATGCTGACTTGGTAAAACGAAGGAATGCTTTTGGTTCCAACAATTACCCTCGAAAGAGCGGAAGAAGTTTTTTGATGTTTATGTGGGATGCTTGCAAGGATCTGACCTTGATTATTTTAATGATAGCTGCCATTGCTTCATTAGCACTGGGGATAAAATCTGAGGGTATTAAGGAAGGATGGTATGATGGGGGAAGCATTGCTTTCGCAGTCATTCTTGTTATTGCTGTTACAGCTATAAGTGATTATAAGCAGTCGCTTCAGTTTCGGGACCTAAATGAGCACAAGAGAAACATACATGTGGAGGTTATTAGAGATGGTAGAAGAGTTGAAATCTCCATATATGATGTTGTTGTTGGTGATATTATACCACTTAACATAGGTAACCAGGTTCCTGCTGATGGAGTTTTGATCACTGGTCACTCTCTTGCAATTGACGAATCAAGTATGACTGGGGAGAGCAAGATTGTTGAAAAAAACTCTAATGATCCTTTTCTGATTTCTGGATGTAAAGTTGCAGATGGCAGTGGCACTATGCTGGTAACAGCTGTTGGTATTAATACTGAATGGGGGCTTCTAATGGCTAGCATTTCAGAAGACACTGGTGAAGAAACACCTTTGCAGGTACGCTTAAATGGTCTCGCCACCTTTATTGGTATTATTGGACTCTCTGTGGCTGTTGTTGTTCTGGTGGTCCTCCTGGCCAGACTTGCCTACTCAATGAAAAAAATGATGGCAGATAAAGCTTTGGTGAGGAGGCTCTCTGCATGTGAGACAATGGGGTCGGCCACAATCATTTGCAGTGATAAGACTGGAACATTGACTTTGAATCAGATGACTGTGGTTGAAGCTTACATTGGTGGGAAGAAGATTGATCCTCCTCATGATAAATCACAGCTTTCTCCTATGCTCTGCTCTTTTCTGATTGAAGGTGTTGCACAGAACACAAATGGAAGTGTTTATGTCCCTGAGGGTGGTAATGATGTTGAGGTTTCTGGATCACCAACAGAAAGGGCAATTTTAGAGTGGGGAATTAAGCTTGGGATGAATTTTGAGGCTGCCAGATCAGAGTCATCAATTATTCATGTCTTCCCATTCAATTCAGACAAAAAGCGAGGAGGAGTTGCATTACAGACGCCTGACTCTGAAATCCATATACACTGGAAAGGTGCTGCTGAGATAGTCCTAGCCTGCTGTACGGGGTATATGGATGCAAATGATCATTTGGTGGAGATGGATGAAGAGAAGATGACAGAATTTAAAAAAGCTATTGAGGATATGGCTGCTGATAGTCTCCGTTGTCTTGCCATTGCATATAGATCGTATGAAATGGACAAGGTTCCAACTAGTGAAGAAGAACTTGTTCACTGGTCGTTACCAGAGGACAATCTCAATTTATTGGCTATTGTTGGTCTGAAGGATCCTTGTCGACCTGGTGTCAAAGATGCTGTGCAGCTTTGCCAAAAGGCTGGGGTTAAGGTTAAAATGGTCACTGGTGACAACATTAAAACTGCAAAAGCAATTGCTGTGGAATGTGGAATACTTGGTTCATTATCTGATGCTACAGAACCAACAATCATTGAAGGAAAAAGATTCCGTGCCTTGACAGATGCACAGAGAGATGACATTGTTGAAAGGATATCGGTAATGGGACGGTCCTCTCCTAATGACAAGCTTTTGCTTGTGCAAGCATTGAGGAGGAAGTACCATGTTGTGGCTGTAACTGGGGATGGAACAAATGATGCTCCTGCACTACATGAGGCCGATATTGGTCTTGCAATGGGTATTCAAGGTACAGAAGTTGCTAAAGAAAGCTCTGATATCATTATTTTGGATGACAAATTTGCTTCAGTTGTGAAGGTTGTCAGATGGGGACGTTCTGTATATGCAAATATTCAGAAATTTATCCAGTTTCAGCTCACAGTCAATATTGCTGCTCTTGTTATAAATGTTGTTGCTGCATTTTGCACTGGTGACATCCCACTAAATACAGTACAGCTTCTCTGGGTAAATCTTATCATGGATACTCTTGGAGCATTAGCTTTGGCAACTGAACCACCCACAGATCACCTGATGGATCTACCTCCAATGGGTCGAAGGGAACCTCTTGTGACAAATATTATGTGGAGGAACCTGCTGATACAAGCAATGTACCAAGTGTCTGTCTTGCTTATACTCAATTTCCGAGGCCAGAACTTACTGGGTTTGAGGGACGAGACAAACCGCCCTGCAATCAAAGTGAAGAACACACTGATATTCAATGCATTTGTTCTTTGTCAAGTCTTCAATGAATTTAATGCACGAAAGCCTGATGAATTCAACATATTCAAGGGAGTCACAAGAAACTGGCTCTTTATGGGAATAGTGGGAGTAACTGTTGTGCTTCAGATTGTCATCATTGAATTTCTTGGAAAGTTCACAAAAACAGTCAAGCTTAGTTGGAAGCAGTGGCTCATTTCTGTTATTATAGGATTTATCAGCTGGCCTCTTGCTGTGGTTGGAAAATGGCTACCAGTTCCAGAGGCTCAATTGAGTAACTTTTTTCGAAAATTGATTCGTTGTGGAAGAACTCAATGA 3072 0.4219 MSFSKGSPCGETQRDVEVGSPTSCSAGFDDGDYSSDPFDISRTKNAPVQRLRRWRQAALVLNASRRFRYTLDLKKEEEKKRVLRIVIVHTRAIQAAYRFKAAGEQVNGLGTVKPPLSSAGEFSIGQEQLSLISRERDTTALQEHGGVVGLSHLLKTNLEKGIQGDDADLVKRRNAFGSNNYPRKSGRSFLMFMWDACKDLTLIILMIAAIASLALGIKSEGIKEGWYDGGSIAFAVILVIAVTAISDYKQSLQFRDLNEHKRNIHVEVIRDGRRVEISIYDVVVGDIIPLNIGNQVPADGVLITGHSLAIDESSMTGESKIVEKNSNDPFLISGCKVADGSGTMLVTAVGINTEWGLLMASISEDTGEETPLQVRLNGLATFIGIIGLSVAVVVLVVLLARLAYSMKKMMADKALVRRLSACETMGSATIICSDKTGTLTLNQMTVVEAYIGGKKIDPPHDKSQLSPMLCSFLIEGVAQNTNGSVYVPEGGNDVEVSGSPTERAILEWGIKLGMNFEAARSESSIIHVFPFNSDKKRGGVALQTPDSEIHIHWKGAAEIVLACCTGYMDANDHLVEMDEEKMTEFKKAIEDMAADSLRCLAIAYRSYEMDKVPTSEEELVHWSLPEDNLNLLAIVGLKDPCRPGVKDAVQLCQKAGVKVKMVTGDNIKTAKAIAVECGILGSLSDATEPTIIEGKRFRALTDAQRDDIVERISVMGRSSPNDKLLLVQALRRKYHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDKFASVVKVVRWGRSVYANIQKFIQFQLTVNIAALVINVVAAFCTGDIPLNTVQLLWVNLIMDTLGALALATEPPTDHLMDLPPMGRREPLVTNIMWRNLLIQAMYQVSVLLILNFRGQNLLGLRDETNRPAIKVKNTLIFNAFVLCQVFNEFNARKPDEFNIFKGVTRNWLFMGIVGVTVVLQIVIIEFLGKFTKTVKLSWKQWLISVIIGFISWPLAVVGKWLPVPEAQLSNFFRKLIRCGRTQ* 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2542 1023 MobiDBLite consensus disorder prediction 1 30 - -
Apr9g2542 1023 SUPERFAMILY HAD-like 430 845 IPR036412 -
Apr9g2542 1023 Gene3D - 429 785 IPR023214 -
Apr9g2542 1023 Pfam E1-E2 ATPase 264 401 - -
Apr9g2542 1023 PANTHER CALCIUM-TRANSPORTING ATPASE 402 1017 - -
Apr9g2542 1023 PANTHER CALCIUM-TRANSPORTING ATPASE 25 401 - -
Apr9g2542 1023 PRINTS P-type cation-transporting ATPase superfamily signature 299 313 - -
Apr9g2542 1023 PRINTS P-type cation-transporting ATPase superfamily signature 432 446 - -
Apr9g2542 1023 PRINTS P-type cation-transporting ATPase superfamily signature 633 644 - -
Apr9g2542 1023 PRINTS P-type cation-transporting ATPase superfamily signature 655 665 - -
Apr9g2542 1023 PRINTS P-type cation-transporting ATPase superfamily signature 740 759 - -
Apr9g2542 1023 PRINTS P-type cation-transporting ATPase superfamily signature 764 776 - -
Apr9g2542 1023 ProSitePatterns E1-E2 ATPases phosphorylation site. 434 440 IPR018303 -
Apr9g2542 1023 Gene3D - 47 101 - -
Apr9g2542 1023 Pfam Cation transporting ATPase, C-terminus 825 1002 IPR006068 -
Apr9g2542 1023 Pfam Cation transporter/ATPase, N-terminus 144 212 IPR004014 -
Apr9g2542 1023 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 232 456 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Apr9g2542 1023 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 708 822 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Apr9g2542 1023 SFLD Haloacid Dehalogenase 414 792 - -
Apr9g2542 1023 Pfam haloacid dehalogenase-like hydrolase 430 754 - -
Apr9g2542 1023 SMART Cation_ATPase_N_a_2 142 217 IPR004014 -
Apr9g2542 1023 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 402 1004 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Apr9g2542 1023 Gene3D - 195 398 - -
Apr9g2542 1023 Gene3D - 399 993 - -
Apr9g2542 1023 Gene3D - 442 640 IPR023299 GO:0000166
Apr9g2542 1023 Gene3D - 168 363 - -
Apr9g2542 1023 Pfam Ca2+-ATPase N terminal autoinhibitory domain 35 78 IPR024750 GO:0005516
Apr9g2542 1023 SFLD p-type atpase 414 792 IPR044492 -
Apr9g2542 1023 PANTHER CATION TRANSPORTING ATPASE 402 1017 - -
Apr9g2542 1023 PANTHER CATION TRANSPORTING ATPASE 25 401 - -
Apr9g2542 1023 SUPERFAMILY Calcium ATPase, transduction domain A 264 360 IPR008250 -
Apr9g2542 1023 SUPERFAMILY Calcium ATPase, transmembrane domain M 146 1003 IPR023298 -
Apr9g2542 1023 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 439 637 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2542 Apr-Chr9 32590404 32609808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2542 36 1018 Primary Pumps ATPases AT3G21180 64.678 0.0 1366
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2542 K01537 - gmx:100790157 1688.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2542 9 32590404 32609808 Apr9g2542 9 32590404 32609808 ECH
Apr9g2542 9 32590404 32609808 Apr1g2337 1 33034035 33049915 PCT