Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2531 ATGGAAGATGATGGAGAATGCATCACAGGGCTACATCTGGGACTGGGAATGGGAGGGCATGTGCCAAGAAAGGAGAAGCAGAAAGAGAACAAGCCTGAGGTGTGCCTAGAGCTAGCGTTTGAGCTTTGTCCAAAAGGGGAAGCCATTGACGTGAATCATAATAAAGCAAATAGAATCAGCTTAGAGAGAATCCATGAGTACCCAAATGAAAAAAGCACTGATTCTGATAACAGCAACAACAAGAACGGTTGCCGAAAGAAACTTAGGCTCACAAAGGAGCAATCAGCCATGCTTGAAAACACCTTCAAACTGCATAGCACTCTCAATCCAGTCCAGAAACAAGCACTTGCTGACCAATTGAATTTAAAAACTAGACAAGTTGAAGTTTGGTTTCAGAACAGAAGAGCAAGGACTAAGCTGAAACAGACAGAGGTGGACCGGGAGTTGTTGAAAAAACACTGTCAAAATCTAAGTGATGAGAACAAAAGGTTAAAGAAGGAATTGCAGGAATTACGTGCACTTAAAGTTGGACCGTCCCCGTTATGCATTCAGCTGTCCAAAACCGCGACCCTGACTATGTGTTCTTCGTGCGAGAAACTAATAAAGCTCAATGAAGCAAAGAACAACATAGAGTTAGAGAGTAGGAATTGA 651 0.427 MEDDGECITGLHLGLGMGGHVPRKEKQKENKPEVCLELAFELCPKGEAIDVNHNKANRISLERIHEYPNEKSTDSDNSNNKNGCRKKLRLTKEQSAMLENTFKLHSTLNPVQKQALADQLNLKTRQVEVWFQNRRARTKLKQTEVDRELLKKHCQNLSDENKRLKKELQELRALKVGPSPLCIQLSKTATLTMCSSCEKLIKLNEAKNNIELESRN* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2531 216 ProSitePatterns 'Homeobox' domain signature. 116 139 IPR017970 GO:0000981|GO:0006355
Apr9g2531 216 Coils Coil 140 174 - -
Apr9g2531 216 SMART HOX_1 83 145 IPR001356 GO:0003677
Apr9g2531 216 PANTHER - 21 206 - -
Apr9g2531 216 Gene3D - 76 147 - -
Apr9g2531 216 SUPERFAMILY Homeodomain-like 72 142 IPR009057 -
Apr9g2531 216 SMART halz 141 184 IPR003106 GO:0006355|GO:0043565
Apr9g2531 216 ProSiteProfiles 'Homeobox' domain profile. 81 141 IPR001356 GO:0003677
Apr9g2531 216 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 21 206 - -
Apr9g2531 216 CDD homeodomain 85 142 IPR001356 GO:0003677
Apr9g2531 216 Pfam Homeodomain 85 139 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2531 Apr-Chr9 32507945 32509298 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2531 75 200 Homeobox Transcription Factor Family AT4G37790 67.969 1.36e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Apr9g2531 Homeodomain 2.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2531 K09338 - gmx:100812222 327.405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2531 9 32507945 32509298 Apr1g2349 1 33141079 33142418 PCT