Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2524 ATGATTCCAACTTATCACCATTCAGTATCTTCTGTTATGCCTCTGGATCTTAATGATGATCAAAACCATGACCTCTTCAGTCCAAATCATCACGCTTCCCCTTCATTTTCTTCTCTATCATCATACCCTATACTCTTCAACCCACCTGTTCAAGATCAAGAAGGATCATACTACCGGGAACCAACAAAGCCACACTTACCAAGTGATGAAGAGGCAGAGAAGATTATTCCTTCTAGCGGATCATGGGATCATAATTCAGCGGCAGAAAGTGAGCACAAGATGACAGTTTGGAAGAAAGAAGAGAGGGATGAAAATTTTGAAGCAGCTTCTGAGGATGGTTCGGTGAAGTGGATGTCTTCAAAGATGAGAATGATGCGGAAGATGATGGTGTCGGATCAAACTGACGCATATGTAGCAGGCAAGTCTACGCACAAGTGTGAAGATAAAAAACAAACATTATCACCGCTTGGAACTCATAATAGCAACAACAATTATTCAAACCACAGTACTAATAACACTGTTAGGGTTTGCTCTGATTGCCACACTACTAAGACTCCTCTCTGGAGGAGTGGACCAAAAGGCCCCAAGTCACTTTGCAACGCATGTGGGATTAGACAAAGGAAGGCCAGACGTGCCATGGCAGCAGCATCGGCAAATGGAACAATTCTTGTGAAATCTGAGACATCTCTGAAAGGAAAGAAGTTGCTGAAAAAAGAGAAGAAATCTAGAATTGAGTGTGCTCCACCACAGATGAAAAAGAAGCGCAAGCTTGGAGCCAAGCCATCCCAAAGTAGAAACAAGTTTGGTTTTGAGGATTTGACGTTGCGCTTAAGTAAGAAGTTGGCTATGCATCAAGTTTTCCCTCAGGACGAGAAGGAGGCTGCGATCTTGCTCATGGCTTTATCTTATGGCCTTGTTCATGGATGA 927 0.4304 MIPTYHHSVSSVMPLDLNDDQNHDLFSPNHHASPSFSSLSSYPILFNPPVQDQEGSYYREPTKPHLPSDEEAEKIIPSSGSWDHNSAAESEHKMTVWKKEERDENFEAASEDGSVKWMSSKMRMMRKMMVSDQTDAYVAGKSTHKCEDKKQTLSPLGTHNSNNNYSNHSTNNTVRVCSDCHTTKTPLWRSGPKGPKSLCNACGIRQRKARRAMAAASANGTILVKSETSLKGKKLLKKEKKSRIECAPPQMKKKRKLGAKPSQSRNKFGFEDLTLRLSKKLAMHQVFPQDEKEAAILLMALSYGLVHG* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2524 308 Pfam GATA zinc finger 177 210 IPR000679 GO:0006355|GO:0043565
Apr9g2524 308 MobiDBLite consensus disorder prediction 153 167 - -
Apr9g2524 308 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 170 213 - -
Apr9g2524 308 PANTHER GATA TRANSCRIPTION FACTOR 21-LIKE 1 308 - -
Apr9g2524 308 MobiDBLite consensus disorder prediction 148 167 - -
Apr9g2524 308 Gene3D - 175 213 IPR013088 GO:0006355|GO:0008270
Apr9g2524 308 ProSitePatterns GATA-type zinc finger domain. 177 202 IPR000679 GO:0006355|GO:0043565
Apr9g2524 308 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 1 308 - -
Apr9g2524 308 MobiDBLite consensus disorder prediction 50 91 - -
Apr9g2524 308 ProSiteProfiles GATA-type zinc finger domain profile. 171 207 IPR000679 GO:0006355|GO:0043565
Apr9g2524 308 CDD ZnF_GATA 176 204 IPR000679 GO:0006355|GO:0043565
Apr9g2524 308 SMART GATA_3 171 222 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2524 Apr-Chr9 32444658 32446473 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2524 89 308 C2C2-Gata Transcription Factor Family AT4G26150 39.130 2.68e-37 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Apr9g2524 GATA 4.9e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2524 - - gmx:100810698 391.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2524 9 32444658 32446473 Apr9g2524 9 32444658 32446473 ECH
Apr9g2524 9 32444658 32446473 Apr1g2352 1 33173606 33175368 PCT