Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2517 ATGGCCCCTCGAATCCTTCTATGCGGCGACGTTTTAGGCCGTCTCAACCAGCTCTACAAGCGTGTCTCATCGGTGAACAAATCTGCAGGTCCTTTCGACGCGCTATTCTGCGTGGGTCAGTTCTTCCCGGACTCGCCGGAGCTGGTGGACGAGTTGACGGCGTACATCCAAGGTGGCTCCCTTATTCCCCTCCCTACTTACTTCATCGGCGACTACGGCGTCGCCGCCCCTAAAATTTTGTCGCAAGCTTCCAAGGACTCTTCCAATCGTGGTTTCAAGATGGACGGCTTCAAGATTTGCGATAACTTGTATTGGTTGAAAGGCGGTGGCAAATTCACTCTCTTCGGATTAACCGTGGTCTATTTATCTGGGAGGAAATTATCCAGTGTTCAACAGTTTGGAAGTTACACTCAAGACGATGTAGATGCATTGCGAGCAATTGCTGAGGAACCTGGAATTGTTGATTTGTTCTTGACTAATGAATGGCCAACTGGGCTCACCAATAGAGCAGCTGCTTCAGACATTCCTGCTGGACTCTCGGATTCCACAGGCAGTGATTCGATTGTATCAGAGTTAGTACAAGAGATCAAACCACGTTATCATATTGCAGGAACTAAAGGCATATACTATGCCCGTGAACCATATTCCAATGTTGATGCTGTGCATGTCACTCGTTTCATAGGGCTTGCATCTGTTGGAAATAAAGATAAGCAGAAATTTATTCATGCACTTTCCCCTACACCTGCATCCACTATGTCTTCAACTGAGATTGGCATGAAAACCACAAATACCACCTTATCGCCATACACCTTTGTGGAGAAAAGAACTTCTCCAAAGGATGCCACAAAGAGATCAAGTGATTCTGTCTCTGATTCTCAGTATTGGAGATATGATGTTTCTCAAAAGCGACAGAAACATGAAGGTGGAGATGGTGATAAGATGTGTTTCAAATTTGTATCTTCTGGCTCTTGTCCACGGGGAGAGAAGTGCTATTTTCGACATGATATAGATGCAAGGGAACAGTATATGAGAGGTGTTTGTTTTGACTTTTTGAACAAGGGAAAATGTGAAAGGGGTCCAGATTGCAATTTTAAGCACAGCTTGCAGGATGAAGGTGACAGGCATCTTTCCAGGAGACCTGGATCTGAAAATACTAGGTCTAGCAGATCAAAAGAATGCTGGTTTTGCTTGTCAAGCCCGAATGTGGAGTCGCATTTAATCGTAAGCATTGGGGAAAATTACTACTTGGCTCTGGCTAAAGGTCCACTTGTTGATGACCATGTACTGATAATACCAGTTGAGCATATGCCCAATACATTATCTCTGTCTTCGGAATCTGAAATTGAGCTCTTTAAGTTTCAAAACAGTCTCAAGAGGTACTGCAGGAACAATGAGAAGGAAGTCATCTTTTTTGAGTGGGCTTCCATACGTGGCACCCATGCCAATCTTCAGGCCATTCCCATTCCATCTTCCAAAGCAGTTATTGTTGAAAAAGTTTTCAATTTAGCTGCACAAAAGTTGGGATTTAAATTTGTGGCTAAGAGATTTGAAAGCATTTCTGATGGAAGAAAGTTTTTGAAGGCACAAATGGATGGCAATTCAAGCTTGTTCTATGCTGAAGTCCCTGGAGGCACAATTCTGCTGCATCACGTTGAAGAGAAAGAGAGATTTCCAGCGCAATTTGGACGCGAGGTTCTGGCGGGGTTACTTAATATGGCAGATAATGCAGATTGGAGGAATCACAAACATAACAAAGATGAGGAAATGAAAATTGTTGAGGATTTCAAGAGCCGATTTCAAGAATATGATCCTAATTGTTGA 1821 0.4349 MAPRILLCGDVLGRLNQLYKRVSSVNKSAGPFDALFCVGQFFPDSPELVDELTAYIQGGSLIPLPTYFIGDYGVAAPKILSQASKDSSNRGFKMDGFKICDNLYWLKGGGKFTLFGLTVVYLSGRKLSSVQQFGSYTQDDVDALRAIAEEPGIVDLFLTNEWPTGLTNRAAASDIPAGLSDSTGSDSIVSELVQEIKPRYHIAGTKGIYYAREPYSNVDAVHVTRFIGLASVGNKDKQKFIHALSPTPASTMSSTEIGMKTTNTTLSPYTFVEKRTSPKDATKRSSDSVSDSQYWRYDVSQKRQKHEGGDGDKMCFKFVSSGSCPRGEKCYFRHDIDAREQYMRGVCFDFLNKGKCERGPDCNFKHSLQDEGDRHLSRRPGSENTRSSRSKECWFCLSSPNVESHLIVSIGENYYLALAKGPLVDDHVLIIPVEHMPNTLSLSSESEIELFKFQNSLKRYCRNNEKEVIFFEWASIRGTHANLQAIPIPSSKAVIVEKVFNLAAQKLGFKFVAKRFESISDGRKFLKAQMDGNSSLFYAEVPGGTILLHHVEEKERFPAQFGREVLAGLLNMADNADWRNHKHNKDEEMKIVEDFKSRFQEYDPNC* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2517 606 PANTHER CWF19-LIKE PROTEIN 1 1 605 - -
Apr9g2517 606 Gene3D - 298 367 - -
Apr9g2517 606 ProSiteProfiles Zinc finger C3H1-type profile. 341 369 IPR000571 GO:0046872
Apr9g2517 606 CDD MPP_CWF19_N 6 232 - -
Apr9g2517 606 PANTHER CWF19, CELL CYCLE CONTROL PROTEIN 1 605 IPR040194 -
Apr9g2517 606 SUPERFAMILY CCCH zinc finger 343 370 IPR036855 GO:0046872
Apr9g2517 606 Pfam Protein similar to CwfJ C-terminus 2 519 603 IPR006767 -
Apr9g2517 606 ProSiteProfiles Zinc finger C3H1-type profile. 309 337 IPR000571 GO:0046872
Apr9g2517 606 Pfam Protein similar to CwfJ C-terminus 1 385 500 IPR006768 -
Apr9g2517 606 Gene3D - 368 495 IPR036265 -
Apr9g2517 606 SUPERFAMILY HIT-like 389 464 IPR036265 -
Apr9g2517 606 MobiDBLite consensus disorder prediction 268 287 - -
Apr9g2517 606 SMART c3hfinal6 343 368 IPR000571 GO:0046872
Apr9g2517 606 SMART c3hfinal6 311 336 IPR000571 GO:0046872
Apr9g2517 606 SUPERFAMILY CCCH zinc finger 313 339 IPR036855 GO:0046872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Apr9g2517 CwfJ_C_1 5e-36 CL0265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2517 K24939 - gmx:100782106 1066.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2517 9 32393339 32399039 Apr9g2517 9 32393339 32399039 ECH