Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2506 ATGGGAGAAGAAGTATTAAGAGTCAAAGCAGAGTTACTCGATGACAACGCTCGTTCCAATTCCGAGCTCACGGAAGAAGTAACGGCTCACGTCAAAGAAGAAGTTGATGACAGCGTCGTTAACGCCTCCTCCTCTTCGTCATCGATCAAGTTGCCAAAACCCATGGAAGGGTTAAACGAAGTGGGTCCACCACCCTTTCTCAAGAAGACCTTTGAAATGGTCGAGGACCCTCATACCGACCCCATTGTGTCGTGGAGCAAAACTCGCGATAGTTTCGTCGTTTGGGACTCTCACGAATTCTCCAAAACCCTTCTCCCCAAGTACTTCAAGCACAGCAATTTCTCCAGCTTCGTTCGCCAGCTCAACACCTACGGCTTTAGGAAGGTTGATTCGGACCGTTGGGAGTTTGCAAATGAAGGATTCCAGGGAGGGAAGAAGCATTTGCTGAAGAGCATAAGGAGGAGGAGTAAGTATAACAAACTACATCAGGGATCACTCACTGTGATGAAGCCAGGCTTGGAGGCTGAAGTGGAGAAACTGAAGAAGGATCAGAACATTTTGAAAGTGGAAATTCTCAAGCTTAGGCAGCAGCAGGAGAATTCGCACGTTCAACTCACAAATGTTCAGGAGCGAATTCGGTGTGCTGAGTCAAAGCAGTATCAGATGATATTTTTCCTCACAAGAATGGCTAGAAGGCCACAGTTTCTTGAACAGTTAATCCAAAAGATTAAACGGAAAAGAGAGCTTGATGGTGCTGACATGGTTAAGAGACCAAGATTGCTTGGAACCCCGTGTCATGTAACCTTCCCAAAGGCCATGGAGACTGACCCTGATGTTGATTATAGACACCAAAGTCATAAACAATTCGCTACATTGCAATCCGAGCTCAATGGACTTGTGGCTGAAACTGCGAACACGAGCATGATGGAGCCCCCAACTCCCTCTCCTATGGAAGATGGATTACGCAGCTCAATGCAAGGATTAAGGGCCTATGGTTCTAGATCAAGTGTACAAGATGTACCTTCTGTTTCTGCCTATCATGTCATGTCAGAAAAACTAATGGGGGAAAATTCTGTTGTTGATGAAGAACTAGATGTGAATGACTCCAATATCTATCTTGAGTTAGAGGATTTGATTACTAAGCCAACAGATTGGGTTGGATCTGCTAGTGGACTAGTGGGGCAAACTAGTTGA 1194 0.4548 MGEEVLRVKAELLDDNARSNSELTEEVTAHVKEEVDDSVVNASSSSSSIKLPKPMEGLNEVGPPPFLKKTFEMVEDPHTDPIVSWSKTRDSFVVWDSHEFSKTLLPKYFKHSNFSSFVRQLNTYGFRKVDSDRWEFANEGFQGGKKHLLKSIRRRSKYNKLHQGSLTVMKPGLEAEVEKLKKDQNILKVEILKLRQQQENSHVQLTNVQERIRCAESKQYQMIFFLTRMARRPQFLEQLIQKIKRKRELDGADMVKRPRLLGTPCHVTFPKAMETDPDVDYRHQSHKQFATLQSELNGLVAETANTSMMEPPTPSPMEDGLRSSMQGLRAYGSRSSVQDVPSVSAYHVMSEKLMGENSVVDEELDVNDSNIYLELEDLITKPTDWVGSASGLVGQTS* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2506 397 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-9 41 381 - -
Apr9g2506 397 PRINTS Heat shock factor (HSF) domain signature 66 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr9g2506 397 PRINTS Heat shock factor (HSF) domain signature 104 116 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr9g2506 397 PRINTS Heat shock factor (HSF) domain signature 117 129 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr9g2506 397 SMART hsfneu3 62 155 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr9g2506 397 ProSitePatterns HSF-type DNA-binding domain signature. 105 129 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr9g2506 397 Pfam HSF-type DNA-binding 66 155 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr9g2506 397 Gene3D - 59 156 IPR036388 -
Apr9g2506 397 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 41 381 IPR027725 -
Apr9g2506 397 Coils Coil 177 197 - -
Apr9g2506 397 SUPERFAMILY "Winged helix" DNA-binding domain 62 155 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2506 Apr-Chr9 32309746 32311912 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2506 52 280 HSF AT2G26150 53.390 3.51e-85 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Apr9g2506 HSF_DNA-bind 5.7e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2506 K09419 - gmx:100818430 602.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2506 9 32309746 32311912 Apr9g2506 9 32309746 32311912 ECH