Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2501 ATGACAGTGTGCGGTGACGCCACGAACTGGGACGAAGATGCGTACAGGGAAATCGTACTGAAAGAGAGAGACATTGAAACCCGAACCGTTTTCCGAACCGCTTGGGCTCCCCCTTACACCCCTAACCTTCACACTCTCCTCGTTGCCTCCAGCGACGGTTCCATTGCCTCTTACTCCATCTCTCCCTCTAACCTCAATAATCCCTTTGGTTTTGTGAATGCCGATAAAGATAAATTGTTCGCGGAACCCAATTGCTTCTTTCAAGCGCATGATGGACCTGCGTATGATGTCAAATTCTATGGTGATGGTGAAGATGCTCTGTTGCTGAGCTGTGGTGATGATGGTCGGATTCGAGGATGGAGATGGAAGGAAATTTTAAGCTCAAATTATTCTGTTTCTTCACAAGGAAATGATATCAAGCCAGTACTTGATGTGGTGAATCCTCAACACAAAGGTCCCTGGGGTGCACTTTCACCTATTCCTGAGAATAATGCTATTGCTGCTGATACTCAGCGAGGATCTGTTTTTGCTGCATCTGGTGATTCTTGTGCATATTGTTGGGATGTGGAAACTGGTAAAGTAAAAATGGTATTCAAGGGGCACTTGGACTTTTTGCATTGTATAGTTGCTCGCAACTCCTCTGACCAGATCATAACAGGTTCAGAGGATGGGACTGCACGAATTTGGGATTGCAAAAGTGGAAAGTGTACCCAGGTGATTGATCCAGCAAAAGATTTGAAGTTAAAGGGATCTGTTTCATGGGTTGGCTGTGTTGCCTTAGATGCAAGTGAGAGCTGGTTGGCTTGCAGCAGTGGACGTAATATATCACTTTGGAACCTTCCTGCTTCAGAATGCGTATCAAAGATTCCAACTCGGGCTTGTGTACAGGACATGTTATTTGATAATAATCAAATTTTGGCTGTTGGTGCAGATCCTCTACTGAATCGCTTCAACATGAATGGCATGATCCTTTCGCAAATACAGTGTGCTCCTCCGTCAGCTTTTTCTATCTCCTTACATCCAGCAGGGGTTATGGCAGTAGGGGGTTATGGATGTCTTGTTGATGTTATCTCACAATTTGGCAGCCACATGTGCACATTTCGTTGCCAATCTAGGTTTATAATTAAGGTTGACTTTTACGAGGTTAAACATTTAACAGTTCATTATGAACCCTCGTTTCATTTATCACTTGACACTCACTCACTTCATTCACCATCGCCACAACGCTCTTCCTTTCCTCGACTCCGCGGCGTAGATCCGAGGAGTTTGGGAAACCCTAACCCTACTCCGTTCACCCAATCTTTGCTCCGTCATCATTCTCTAGTCATGGCAGGACTTGCAGCTGAGGGTTCACAGTTCGATGGTCGTCAATATGACGCCAAAATGAGCGACTTGCTTACATCTGATGGACAGGAATTCTTCACATCTTATGATGAGGTTTATGATAGTTTTGACGCTATGGGTTTGCAGGAGAATCTTCTGAGAGGCATTTATGCATATGGTTTTGAAAAGCCATCGGCCATTCAGCAAAGGGGAATAGTTCCCTTCTGCAAGGGACTTGATGTTATTCAACAGGCACAGTCTGGAACTGGAAAGACAGCAACTTTTTGCTCTGGTATTCTGCAGCAACTTGACTACAGTTTGACACAATGCCAGGCCTTGGTTTTGGCACCAACTCGTGAGCTTGCTCAGCAGATTGAGAAAGTTATGCGGGCGCTTGGTGATTATCTTGGTGTCAAGGTTCATGCTTGTGTGGGAGGTACTAGTGTTCGTGAAGACCAACGCATTCTATCCAGTGGTGTTCATGTTGTGGTTGGTACTCCAGGTCGTGTGTTTGATATGCTGCGCAGGCAGTCACTTCAGCCAGATTACATCAAGATGTTTGTATTGGATGAGGCTGATGAAATGCTTTCCCGAGGTTTTAAAGATCAGATCTACGATATATTTCAGCTGCTGCCATCTAAAATTCAAGTGGGAGTTTTCTCTGCTACCATGCCTCCTGAGGCCCTTGAGATCACAAGGAAGTTTATGAACAAACCTGTGAGGATCCTTGTGAAACGTGATGAGCTCACTTTGGAAGGTATTAAGCAGTTTTATGTCAACGTTGAGAGAGAGGAATGGAAGCTGGACACACTCTGTGATCTTTATGAGACATTAGCTATCACTCAGAGTGTCATTTTTGTAAACACCAGAAGGAAAGTCGATTGGTTGACTGACAAAATGAGAAGCCGAGACCACACTGTCTCTGCAACCCATGGAGACATGGACCAGAATACCAGGGACATTATTATGCGTGAATTCCGTTCTGGGTCTTCCCGTGTTTTAATAACTACTGATCTTTTGGCTCGTGGTATTGATGTCCAACAAGTGTCTCTAGTTATAAATTATGATCTCCCTACACAGCCTGAGAACTATCTTCATCGCATTGGTCGAAGTGGGAGGTTTGGCAGGAAAGGTGTTGCCATCAACTTTGTCACGAAGGACGATGAAAAAATGCTGTTTGACATCCAGAAGTTTTACAACGTGGTAGTCGAGGAGCTGCCATCAAATGTTGCTGAGCTCCTCTGA 2568 0.4474 MTVCGDATNWDEDAYREIVLKERDIETRTVFRTAWAPPYTPNLHTLLVASSDGSIASYSISPSNLNNPFGFVNADKDKLFAEPNCFFQAHDGPAYDVKFYGDGEDALLLSCGDDGRIRGWRWKEILSSNYSVSSQGNDIKPVLDVVNPQHKGPWGALSPIPENNAIAADTQRGSVFAASGDSCAYCWDVETGKVKMVFKGHLDFLHCIVARNSSDQIITGSEDGTARIWDCKSGKCTQVIDPAKDLKLKGSVSWVGCVALDASESWLACSSGRNISLWNLPASECVSKIPTRACVQDMLFDNNQILAVGADPLLNRFNMNGMILSQIQCAPPSAFSISLHPAGVMAVGGYGCLVDVISQFGSHMCTFRCQSRFIIKVDFYEVKHLTVHYEPSFHLSLDTHSLHSPSPQRSSFPRLRGVDPRSLGNPNPTPFTQSLLRHHSLVMAGLAAEGSQFDGRQYDAKMSDLLTSDGQEFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSLTQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLQPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEREEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDEKMLFDIQKFYNVVVEELPSNVAELL* 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2501 855 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 694 855 IPR001650 -
Apr9g2501 855 Gene3D - 13 373 IPR015943 GO:0005515
Apr9g2501 855 SUPERFAMILY WD40 repeat-like 35 360 IPR036322 GO:0005515
Apr9g2501 855 PANTHER EUKARYOTIC INITIATION FACTOR 4A-2 465 855 - -
Apr9g2501 855 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 482 510 IPR014014 GO:0003724
Apr9g2501 855 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 551 836 IPR027417 -
Apr9g2501 855 PANTHER RNA HELICASE 465 855 - -
Apr9g2501 855 Pfam WD domain, G-beta repeat 248 279 IPR001680 GO:0005515
Apr9g2501 855 Pfam WD domain, G-beta repeat 194 230 IPR001680 GO:0005515
Apr9g2501 855 SMART ultradead3 501 698 IPR014001 -
Apr9g2501 855 CDD DEADc_EIF4A 486 684 - -
Apr9g2501 855 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 198 230 - -
Apr9g2501 855 Pfam DEAD/DEAH box helicase 507 668 IPR011545 GO:0003676|GO:0005524
Apr9g2501 855 MobiDBLite consensus disorder prediction 400 428 - -
Apr9g2501 855 CDD SF2_C_DEAD 695 825 - -
Apr9g2501 855 Gene3D - 472 690 IPR027417 -
Apr9g2501 855 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 513 683 IPR014001 -
Apr9g2501 855 SMART helicmild6 735 816 IPR001650 -
Apr9g2501 855 Pfam Helicase conserved C-terminal domain 708 816 IPR001650 -
Apr9g2501 855 Gene3D - 691 855 IPR027417 -
Apr9g2501 855 ProSiteProfiles Trp-Asp (WD) repeats profile. 198 239 IPR001680 GO:0005515
Apr9g2501 855 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 629 637 IPR000629 -
Apr9g2501 855 SMART WD40_4 191 230 IPR001680 GO:0005515
Apr9g2501 855 SMART WD40_4 241 279 IPR001680 GO:0005515
Apr9g2501 855 SMART WD40_4 80 121 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2501 Apr-Chr9 32266756 32276588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2501 443 855 Eukaryotic Initiation Factors Gene Family AT1G72730 88.647 0.0 764
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2501 K03257 - pvy:116113663 1311.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2501 9 32266756 32276588 Apr9g2501 9 32266756 32276588 ECH