Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2498 ATGTCAACACCGTCACCGAGATCGGTTGCCGTTGCCGTCAGTGGCGGCTCCGGCGCCGCCAAGGGTAGCCGGCGAGCCGTGCAGTGGGCGCTGGACAACCTCGTCCCTCAAGCCGATAGGTTCATCTTAGTTCACGTCATCCCCAGAATCACTTCAATTACAACCCCAACTGGAGATTATATTCCCATTTCAGAAGTAGATGCCGATGTGTTTGCAGCTTATGTGGAGGATGTGAAACAAAAGTCTGAACAAATCTTTGTTCCATTCAAGGAACTCTGCGATTCCAACTTGATGGAAACCATACTGCTAGAAGATGACAATGCTGCAAATGCACTTCTTAGCTTTATTTTGGAGTCGGGGGTCCAAATATTAGTGCTTGGTTCTGACTCCTCAAATTTTATAACAAGGAAGCTAAAAGGACCAGGGATACCAACTCCCATTCTAAGATATGCTCCTGAGAGCTGTGATGTATATGTTGTAGCAAGAGATAGAATTATATCGAAGTTAGCTGGATTTTCATCTTCACATTCTCATGAGGCAAGTTCAAGGTACTTCATGTCTACGAAAGTAAATAAAGTAGACAATGGTGCTGGCATTAGTAGAGAAATGTCTGGAATTAATTCATCCTCAGCAGAACCTAAACTACTAAAAAATTTCAGATTTTTATCAATATCAGAGCGGAGTTATGTTGGTCTGAAGACATCTAGTCGTAGGAATTCTTTTGAAAATTCTACCAAAAATGAAGAAGAAAATACAGAAAACTGTGGAGATGATATTGACACTTTCAACCTCCACTCGTTTGATTCCATTACATCGGCACAACGTGAACAGTTTATCATGCAAGAAGAAGTGGAACGGCTGCAGATGGAGTTGCAGAATACTATTGCCATGTACAAACAGGTTTGTGAAGACCTGGTTCAAGCTCAAAACAAGGCCCTTTTACTTACTTCTGAATCTCTTGAAGAAGCTAAAAGAGTAAATGCTTCCCTGAAAAGAGAGGAGATATTGAGAAAGATTGCTGCTGAAGAGAAAACAAAATATTTGAAAGTCATGAAAGAACTAGAGGAGGCAAAAAGTATGCTTGCCAAAGAGTCATACGAAAGACAGATGGCTGAACTTGATATTCTTAAAGAATCAATAGAAAAACAGAGAATTGTTGATACGTTGCTCTCAAATGACAGGAGATACAGAAAGTACACCATGGATGAAATCAAGATAGCAACAAAGTTCTTTGCTGAGGACTTAGTAATTGGTGAAGGAGGATATGGGAAAGTTTACAAGTGCAATCTTGATCACACACCAGTAGCTGTAAAGGTTCTGCACCAGGATGCAATCAACAAGAGAGAGGAGTTTCTGAAAGAGGTTGAGATTCTTAGTCAACTACATCATCCTAATATGGTTTTATTACTTGGAGCCTGTCCTGAGAATGGTTGCCTTGTTTATGAATACCTGGAAAATGGAAGCCTAGAAGACTATCTTCTCAACAAAAATGGAAAACCACCACTTCCTTGGTTTTCTCGATTTCGTGTAGTTTTTGAAATGGCTTGTGGGCTCTCATTCCTACATAATTCAAAGCCAGAACCTATTGTTCATCGAGATATAAAACCTGGCAATATCCTTTTAGACAGAAATTATGTAAGCAAAATTTCAGATGTTGGGCTAGCTAAACTTCTTTCAGACGTGGTGCCTGACAATGTAACAGAGTACAGAGAATCAATGCTTGCTGGTACTTTGCACTACATGGACCCTGAGTATCAGAGAACAGGCACTGTCCGACCAAAATCAGATGTATATGCTTTTGGAGTCATAACTCTCCAATTGATAACTGGTGGCCATGCACGTGGACTCATTCTGACTGTTGAAGATGCAATTAGAAATGGCTCCTTCCGTGATATATTAGATAAATCAGCTGGGAATTGGCCACTGGATGAGACAGTGGAATTGGCTAAAGTTGCCCTTCAATGTGCTGCACTTAGATGCAGAGATAGACCAGAACTTGATACTGAAGTTCTTCCACTGCTCAAAAGACTTTCTGATGTGGCAAATGTTAGTGCAAGGAGGGGAAGAAATAGTGCAAGAGCACCAAGCCAGTATTATTGTCCAATCCTTCAGGAAATCATGGATGATCCATATATTGCTGCGGATGGTTTCACTTATGAGTACAGAGCAATCAAGGCATGGCTCAGCAAACACTGTGTGTCCCCCATGACAAAGATTAAACTCCAGCATTCTACGTTGACTCCAAACCATACTTTACGTTCTGCCATTCAGGAGTGGAAGTCTGGAGTAACCCCTTTTAATTAG 2304 0.4106 MSTPSPRSVAVAVSGGSGAAKGSRRAVQWALDNLVPQADRFILVHVIPRITSITTPTGDYIPISEVDADVFAAYVEDVKQKSEQIFVPFKELCDSNLMETILLEDDNAANALLSFILESGVQILVLGSDSSNFITRKLKGPGIPTPILRYAPESCDVYVVARDRIISKLAGFSSSHSHEASSRYFMSTKVNKVDNGAGISREMSGINSSSAEPKLLKNFRFLSISERSYVGLKTSSRRNSFENSTKNEEENTENCGDDIDTFNLHSFDSITSAQREQFIMQEEVERLQMELQNTIAMYKQVCEDLVQAQNKALLLTSESLEEAKRVNASLKREEILRKIAAEEKTKYLKVMKELEEAKSMLAKESYERQMAELDILKESIEKQRIVDTLLSNDRRYRKYTMDEIKIATKFFAEDLVIGEGGYGKVYKCNLDHTPVAVKVLHQDAINKREEFLKEVEILSQLHHPNMVLLLGACPENGCLVYEYLENGSLEDYLLNKNGKPPLPWFSRFRVVFEMACGLSFLHNSKPEPIVHRDIKPGNILLDRNYVSKISDVGLAKLLSDVVPDNVTEYRESMLAGTLHYMDPEYQRTGTVRPKSDVYAFGVITLQLITGGHARGLILTVEDAIRNGSFRDILDKSAGNWPLDETVELAKVALQCAALRCRDRPELDTEVLPLLKRLSDVANVSARRGRNSARAPSQYYCPILQEIMDDPYIAADGFTYEYRAIKAWLSKHCVSPMTKIKLQHSTLTPNHTLRSAIQEWKSGVTPFN* 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2498 767 ProSitePatterns Serine/Threonine protein kinases active-site signature. 529 541 IPR008271 GO:0004672|GO:0006468
Apr9g2498 767 Pfam U-box domain 695 760 IPR003613 GO:0004842|GO:0016567
Apr9g2498 767 ProSitePatterns Protein kinases ATP-binding region signature. 417 438 IPR017441 GO:0005524
Apr9g2498 767 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 694 764 IPR013083 -
Apr9g2498 767 ProSiteProfiles U-box domain profile. 693 766 IPR003613 GO:0004842|GO:0016567
Apr9g2498 767 PANTHER OS02G0152300 PROTEIN 8 762 - -
Apr9g2498 767 CDD STK_N 8 162 - -
Apr9g2498 767 Gene3D Phosphorylase Kinase; domain 1 390 483 - -
Apr9g2498 767 ProSiteProfiles Protein kinase domain profile. 411 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g2498 767 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 7 161 - -
Apr9g2498 767 SMART serkin_6 411 674 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g2498 767 Coils Coil 337 357 - -
Apr9g2498 767 Pfam Protein tyrosine and serine/threonine kinase 416 667 IPR001245 GO:0004672|GO:0006468
Apr9g2498 767 SMART Ubox_2 697 759 IPR003613 GO:0004842|GO:0016567
Apr9g2498 767 Coils Coil 363 383 - -
Apr9g2498 767 Gene3D Transferase(Phosphotransferase) domain 1 484 693 - -
Apr9g2498 767 SUPERFAMILY RING/U-box 692 760 - -
Apr9g2498 767 Gene3D HUPs 7 160 IPR014729 -
Apr9g2498 767 SUPERFAMILY Protein kinase-like (PK-like) 394 666 IPR011009 -
Apr9g2498 767 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34 8 762 - -
Apr9g2498 767 CDD RING-Ubox_WDSUB1_like 698 738 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2498 Apr-Chr9 32237240 32243778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2498 4 761 Plant U-box Gene Family AT5G57035 53.384 0.0 823
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Apr9g2498 PK_Tyr_Ser-Thr 4.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2498 - - gmx:100805896 1290.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2498 9 32237240 32243778 Apr9g2498 9 32237240 32243778 ECH