Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2493 ATGAAGAAAGGAAACTTGGGGCCCAGTCTCAAACTCTCAGTTCCTGCATCTGATCAAGCTAATTTTGCCAAGTTCTTGACTGAAAGTGGGACGTTTAAGGATGGCGATCTGCTTGTTAATAGGGATGGGGTTCGAATTGTCTCTCAGAGTGAAGTCGAAGCTCCACCTCCAATCAAGCCAACAGACAACCAGTTAAGTTTGGCAGACATAGATGTAATCAAAGTTGTTGGTAAGGGAAATGGAGGAGTAGTCCAATTGGTACAACACAAATGGACTAGCCAGTTTTTTGCATTGAAGGTAATTCAGATGAATATCGAGGAGTCTATGCGCAAGCAGATTGCACAAGAGCTGAAAATTAATCAACAAGCACAATGTCCTTACGTTGTTGTCTGCTACCAATCATTCTATGAGAATGGTGTCATATCAATCATCTTAGAGTACATGGATGGAGGTTCCTTAGCTGATCTTCTGAAGAAAGTTAAAACAATTCCTGAGCCTTATCTTGCTGCCATCTGTAAGCAGGTGCTGAAGGGTTTAATGTATCTTCACCATGAACAGCATATTATCCACAGAGACTTAAAACCTTCTAATTTGTTAATAAATCATATAGGTGAAGTAAAGATTACTGACTTTGGTGTGAGTGCAATTATGGAAAGTACATCTGGTCAAGCAAATACTTTCATTGGCACATACAATTATATGTCTCCAGAGAGAATTAATGGAAGTCAGCGAGGCTACAACTACAAAAGTGATATATGGAGTTTGGGACTAGTATTGCTTGAGTGTGCTGTGGGGCGGTTTCCATATGCACCACCTGATCAAAGTGAAAGATGGGAAAGCATATTCGAGCTTATTGAAACGATTGTTGATCAACCTCCTCCTAGTGCTCCATCTGAACAATTTTCTACAGAATTTTGCTCATTTATCTCAGCATGTCTACAGAAAGACCCAAAGGATCGACTATCGGCTCAGGAACTAATGAGACATCCATTTATCGGCATGTATGATGACTTGGATGTGGATCTTTCAGCTTACTTCTCCAATGCAGGATCTCCTCTTGCAACCTTATAA 1071 0.4043 MKKGNLGPSLKLSVPASDQANFAKFLTESGTFKDGDLLVNRDGVRIVSQSEVEAPPPIKPTDNQLSLADIDVIKVVGKGNGGVVQLVQHKWTSQFFALKVIQMNIEESMRKQIAQELKINQQAQCPYVVVCYQSFYENGVISIILEYMDGGSLADLLKKVKTIPEPYLAAICKQVLKGLMYLHHEQHIIHRDLKPSNLLINHIGEVKITDFGVSAIMESTSGQANTFIGTYNYMSPERINGSQRGYNYKSDIWSLGLVLLECAVGRFPYAPPDQSERWESIFELIETIVDQPPPSAPSEQFSTEFCSFISACLQKDPKDRLSAQELMRHPFIGMYDDLDVDLSAYFSNAGSPLATL* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2493 356 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 1 356 - -
Apr9g2493 356 CDD PKc_MAPKK_plant_like 85 336 - -
Apr9g2493 356 PANTHER MAP KINASE KINASE 1 356 - -
Apr9g2493 356 SUPERFAMILY Protein kinase-like (PK-like) 64 339 IPR011009 -
Apr9g2493 356 Gene3D Phosphorylase Kinase; domain 1 45 149 - -
Apr9g2493 356 ProSiteProfiles Protein kinase domain profile. 70 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g2493 356 Gene3D Transferase(Phosphotransferase) domain 1 150 352 - -
Apr9g2493 356 SMART serkin_6 70 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g2493 356 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
Apr9g2493 356 Pfam Protein kinase domain 72 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g2493 356 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2493 Apr-Chr9 32201570 32206196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2493 1 327 MAP Kinase Kinase Gene Family AT4G29810 68.452 2.26e-173 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Apr9g2493 Pkinase 2.6e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2493 K20603 - gmx:100789734 666.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2493 9 32201570 32206196 Apr9g2493 9 32201570 32206196 ECH
Apr9g2493 9 32201570 32206196 Apr1g2382 1 33476780 33482288 PCT