Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2485 ATGGACGGTGGAGCGCAGTACAACCCTCGCACCGTCGAGGAGGTTTTCAGGGACTTCAAAGGACGAAGAGCCGGCATGATCAAGGCTCTAACCACTGAGGTTGAAGAATTTTACCAGCAGTGCGATCCTGAAAAGGATAATCTTTGTCTGTACGGATTCCCCAATGAACAATGGGAAGTTAATTTACCTGCGGAGGAAGTTCCACCAGAACTTCCTGAGCCTGCATTGGGTATAAACTTTGCTAGGGATGGGATGCAAGATAAGGACTGGCTGTCTTTGGTTGCTGTTCATAGTGATGCATGGTTACTTGCAGTGGCTTTCTACTTCGGGGCGCGATTTGGTTTTGATAAAGCTGACAGGAAACGCCTGTTCACTATGATTAATGATCTACCGACAATATTTGAGGTTGTGACTGGAAGTGCCAAAAAACATGCCAAGGAAAAGTCATCCGTTTCAAACCACACCGACAACAAATCAAAAGCCAGTTCAAAAGGGCGAGGATCTGAATCAGGGAAGTATTCCAAACAAGCAAAGGACGAGGAGGATGAGGGATTGGATGAAGATGAGGAGGAGCATGGGGAGACATTGTGTGGCGCATGTGGGGAGAACTATGCATCTGATGAGTTCTGGATTTGTTGTGACATATGTGAGAAGTGGTTCCATGGCAAATGTGTGAAGATCACTCCTGCCAGGGCTGAGCACATTAAGCAGTATAAGTGTCCCTCATGCAGCAACAAGAGAGCACGGCCTTGA 753 0.4714 MDGGAQYNPRTVEEVFRDFKGRRAGMIKALTTEVEEFYQQCDPEKDNLCLYGFPNEQWEVNLPAEEVPPELPEPALGINFARDGMQDKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRKRLFTMINDLPTIFEVVTGSAKKHAKEKSSVSNHTDNKSKASSKGRGSESGKYSKQAKDEEDEGLDEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2485 250 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Apr9g2485 250 ProSitePatterns Zinc finger PHD-type signature. 197 243 IPR019786 -
Apr9g2485 250 SUPERFAMILY FYVE/PHD zinc finger 185 247 IPR011011 -
Apr9g2485 250 MobiDBLite consensus disorder prediction 145 180 - -
Apr9g2485 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 245 IPR013083 -
Apr9g2485 250 CDD PHD_AL_plant 196 246 IPR044104 -
Apr9g2485 250 Pfam PHD-finger 197 246 IPR019787 -
Apr9g2485 250 ProSiteProfiles Zinc finger PHD-type profile. 194 246 IPR019787 -
Apr9g2485 250 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 3 250 - -
Apr9g2485 250 MobiDBLite consensus disorder prediction 145 188 - -
Apr9g2485 250 SMART PHD_3 196 244 IPR001965 -
Apr9g2485 250 PANTHER CPG BINDING PROTEIN 3 250 IPR045104 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2485 Apr-Chr9 32144766 32148953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2485 1 249 Alfin-like Transcription Factor Family AT3G42790 76.190 2.11e-126 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Apr9g2485 Alfin 1.4e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2485 - - cpap:110817645 480.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2485 9 32144766 32148953 Apr2g2405 2 28685221 28690535 ECH
Apr9g2485 9 32144766 32148953 Apr10g1045 10 22828526 22832792 ECH
Apr9g2485 9 32144766 32148953 Apr9g2485 9 32144766 32148953 ECH