Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2478 ATGTCGGTGAATTTAACGCCGAATGCGATCCCGGCGATAGTGGCCGGCGACATGAACTCGAAGCCGCTGTTGCAGGTTCTTGATATCAAGTTGATTCGAAACAGTATGCAGCAAGAGAGGTACCGCATTTTGCTTTCCGACGCCGTTTCCTCTCAGCAAGCCATGCTCGCGACTCAGCTCAACGACCGAGTCCGAACCGGTCAAGTCAAGAAAGGTTCCGTTGTTCAGCTGATCGACTACATTTGCAGTCCTATTCAGAATCGCAAGATTGTTGTGGTGCTCAATTTGGAAACTATAATACCAGATTGCGAGATCATTGGAAATCCAAAGTCATTTGTGGAATCTGATTTGGCAACTCAAGGAGCATTACCTAATAACAATAAGCAAGACTCATCCGGGAGTAATAATTATCATCAGGCAGCTCAAAGTGGAAGTTGTAATGTGCAGAATTTCCGGCCAACTGTTCAACCTCCGGTTTACAGAAGTCATGGTGCGATTGTGAAAAATGAGGCCCCGCCTTGTATTATTCCAATAGCTGCTTTAAATCCTTATCAAGGTCGGTGGGCCATCAAGGCAAGGGTAACTGCAAAAGGGGATTTGCGCCGTTATAATAATGCCCGGGGAGATGGGAAGGTCTTCTCATTTGATCTTCTTGATTCTGATGGAGGTGAAATACGGGTAACCAGCTTTAATGCAGTTGTGGATCGATTCTATGATGCAATTGAAGTTGGTAGAGTTTACTTGATATCCAAAGGTAGCCTGAAACCTGCGCAGAAGAACTTCAACCATTTGAAGAATGAATGGGAAATACTGTTGGATTTGACTTCAGCTGTTGAACTTTGCCCAGATGAAGATGGTTCTATACCTAAACAGCAGTTTTCCTTTAGGCCTATCAGTGATGTTGAGAAAGTTGACAATAATTCCATACTTGATGTTATTGCCGTTGTGACATCCGTGTATCCATCAGTTCCTATCTTGAGGAAGAATGGAATGGAAACTCAAAGAAGAATTTTGAATCTAAAGGACAATTCGGGGAGGAATGTTGAGCTAATCCTTTGGGGTGAATTTTGTAACAGGGAAGGCCAAAAGTTGCATGAGATGGTCGATGCTGGGTTTTTCCCAATTCTGGCAGTCAAAGCTGGGAAGGTTAATGACTTCACAGGGAAGTCTATAGGGACTATTTCTGCTACACAGCTTTTCATAAACCCAGATTTCTCTGAGGCACGTAGCTTAAGGGACTGGTTTGATCAAGTGGGAAAAGATTCTTCATCTCTGTCCATTTCGAAGGACATTATACCTGGAGGACCTAAGTATGATGTACGAAAAACCGTCTCTCAGATCAAGGATGAAGGTCTGGGGCGGTCAGATAAGCCAGATTGGATAACAGTGAGTGCAACAATATCTTTCATCAAGACTGATACATTTTGTTACACAGCTTGCCCTCTGATGATTGGAGATCGGCAGTGCAACAAGAAGGTGAATAGGTCAGGAAACACAAGATGGCAATGTGATAGATGCAACCAAGAGTTTGAGGAGTGTGATTACCGATATCTTCTTCAAGCTCAAATTCTGGATCATTCTGGAATAACTTGGGTTACTGCTTTCCAGGAATCAGGGGAAGAGATTTTGGGTTACTCAGCAAAGGAGATGTACTTGTTGAAGTATGAGAAGCAGGATGATGAGAAGTTTGGAGGAATAATCAAGAGTAGACTCTTCAACCAATTTATCTTGAGGCTAAAAATTAAAGAGGAATTGTATGGTGATGAGCAGAGGGTGAAGATTACAGTAATTAAGGCAGATAAGGTGAATTATTCTTCGGAGAGTAGATACATGCTTGATTTGGTTTCAAAGTTTTGCAGGCTCTAG 1866 0.4271 MSVNLTPNAIPAIVAGDMNSKPLLQVLDIKLIRNSMQQERYRILLSDAVSSQQAMLATQLNDRVRTGQVKKGSVVQLIDYICSPIQNRKIVVVLNLETIIPDCEIIGNPKSFVESDLATQGALPNNNKQDSSGSNNYHQAAQSGSCNVQNFRPTVQPPVYRSHGAIVKNEAPPCIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTSFNAVVDRFYDAIEVGRVYLISKGSLKPAQKNFNHLKNEWEILLDLTSAVELCPDEDGSIPKQQFSFRPISDVEKVDNNSILDVIAVVTSVYPSVPILRKNGMETQRRILNLKDNSGRNVELILWGEFCNREGQKLHEMVDAGFFPILAVKAGKVNDFTGKSIGTISATQLFINPDFSEARSLRDWFDQVGKDSSSLSISKDIIPGGPKYDVRKTVSQIKDEGLGRSDKPDWITVSATISFIKTDTFCYTACPLMIGDRQCNKKVNRSGNTRWQCDRCNQEFEECDYRYLLQAQILDHSGITWVTAFQESGEEILGYSAKEMYLLKYEKQDDEKFGGIIKSRLFNQFILRLKIKEELYGDEQRVKITVIKADKVNYSSESRYMLDLVSKFCRL* 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2478 621 SUPERFAMILY Nucleic acid-binding proteins 1 108 IPR012340 -
Apr9g2478 621 SUPERFAMILY Nucleic acid-binding proteins 292 420 IPR012340 -
Apr9g2478 621 Gene3D - 174 284 IPR012340 -
Apr9g2478 621 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A 2 615 - -
Apr9g2478 621 MobiDBLite consensus disorder prediction 121 143 - -
Apr9g2478 621 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 4 616 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Apr9g2478 621 Gene3D - 287 426 IPR012340 -
Apr9g2478 621 CDD RPA1_DBD_A 177 280 - -
Apr9g2478 621 Pfam Replication factor-A protein 1, N-terminal domain 5 99 IPR007199 GO:0003677|GO:0005634|GO:0006260
Apr9g2478 621 CDD RPA1N 9 100 IPR007199 GO:0003677|GO:0005634|GO:0006260
Apr9g2478 621 Pfam Replication protein A OB domain 298 402 IPR031657 -
Apr9g2478 621 Gene3D - 432 619 IPR012340 -
Apr9g2478 621 CDD RPA1_DBD_C 444 617 IPR013955 -
Apr9g2478 621 Gene3D - 3 113 IPR012340 -
Apr9g2478 621 Pfam Replication factor-A C terminal domain 460 610 IPR013955 -
Apr9g2478 621 SUPERFAMILY Nucleic acid-binding proteins 441 618 IPR012340 -
Apr9g2478 621 SUPERFAMILY Nucleic acid-binding proteins 175 287 IPR012340 -
Apr9g2478 621 CDD RPA1_DBD_B 309 416 - -
Apr9g2478 621 PANTHER REPLICATION FACTOR A 1, RFA1 2 615 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Apr9g2478 621 Pfam OB-fold nucleic acid binding domain 189 264 IPR004365 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2478 Apr-Chr9 32098859 32101229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2478 24 617 Core DNA Replication Machinery Family AT2G06510 68.285 0.0 868
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2478 K07466 - zju:107409151 986.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2478 9 32098859 32101229 Apr9g2478 9 32098859 32101229 ECH