Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2473 ATGGGGAGAAGCCCTTGTTGTTCAAAGGAAGGTTTGAATAGAGGTTCTTGGACAGCTCACGAAGACAAAATCCTCACAGAGTACATTAGAGTCCATGGTGAAGGAAGATGGAGAAACCTTCCCAAAAGAGCAGGTTTGAGAAGATGTGGGAAAAGTTGCAGACTTCGATGGTTGAATTATCTCAGACCAGACATTAAGAGAGGCAATATATCCTCAGATGAAGAAGAGCTCATCATCAGGCTTCACAAGCTCCTGGGAAACAGATGGTCTTTAATAGCAGGGAGGCTTCCGGGGCGAACAGACAATGAAATAAAGAACTACTGGAACACTAATTTAGGAAAAAAGCTTAAAGATGCTCAACTACCTCTCAATGGAAAAAGCACAGAGAATCCAATGTCCCAAATAACCACCACCATGCCATTGCCCACTACCTCATCCTCACCCTCACTACCTCCTCCTTCCAATGTGTTTCGTACAAAAGCTACTAAGTGCTCTAAGGTATTATTCTTAAACCCACTCCCTCACTCTTCAATGCAATTGGAGAACAACTCCAAGGAAGAGGCTGAAGTGGAAGCAACGTCATTGCTTGTGGATACTTTAGCAGCTAATTCTTCACTAAGTAACCAAATGGGAAAAGAACCCGGTATATACGACAATGGGTTTGTGTCATTTCCCGGTGAAGAAAAAGAACTCTCAACGGATTTGCTCATAGATTTCAACGTGGATGATATTTCCTTGTCTGATCTTCTGAACTCGGATTTTTCAAACATGTGCAATTTCGGTTACAGCGACGTTAACAATAACGACCTCGAACAGTTATCTCCTTGCTCGGACCAAACTCCTATGTTCTCTGATGAAGTTCTCAAGGAGTGGACACAAAGCAATTTTTCAGATGAAACCAATGGGTCGAACAACATTCATTCTTTCACTTCGTTCCTCGAGTCCAGTGAGGAATGA 957 0.4263 MGRSPCCSKEGLNRGSWTAHEDKILTEYIRVHGEGRWRNLPKRAGLRRCGKSCRLRWLNYLRPDIKRGNISSDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLGKKLKDAQLPLNGKSTENPMSQITTTMPLPTTSSSPSLPPPSNVFRTKATKCSKVLFLNPLPHSSMQLENNSKEEAEVEATSLLVDTLAANSSLSNQMGKEPGIYDNGFVSFPGEEKELSTDLLIDFNVDDISLSDLLNSDFSNMCNFGYSDVNNNDLEQLSPCSDQTPMFSDEVLKEWTQSNFSDETNGSNNIHSFTSFLESSEE* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2473 318 Gene3D - 70 137 - -
Apr9g2473 318 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Apr9g2473 318 CDD SANT 16 61 IPR001005 -
Apr9g2473 318 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Apr9g2473 318 SMART sant 13 63 IPR001005 -
Apr9g2473 318 SMART sant 66 114 IPR001005 -
Apr9g2473 318 Gene3D - 14 66 - -
Apr9g2473 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Apr9g2473 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Apr9g2473 318 CDD SANT 71 112 IPR001005 -
Apr9g2473 318 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Apr9g2473 318 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Apr9g2473 318 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Apr9g2473 318 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 277 - -
Apr9g2473 318 PANTHER TRANSCRIPTION FACTOR TT2 1 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2473 Apr-Chr9 32070151 32071644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2473 4 147 MYB Transcription Factor Family AT3G13540 61.184 2.05e-62 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr9g2473 Myb_DNA-binding 2.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2473 K09422 - gmx:100802704 439.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2473 9 32070151 32071644 Apr10g1059 10 22993184 22994693 ECH
Apr9g2473 9 32070151 32071644 Apr9g2473 9 32070151 32071644 ECH
Apr1g2402 1 33636999 33638795 Apr9g2473 9 32070151 32071644 PCT