Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2470 ATGAATGCAAGGAACAGGTTCCCCTTCACTCCATCACAGTGGCAAGAGCTTGAACACCAAGCCCTCATCTACAAATACATGGCTTCGGGTATCTCCATTCCACCTGATCTTCTCTTCACCATCAAAAGAAGCTACATAGATTCTCCTCTCTCTTCTAGGCTCATGTCTCACCAACCTCAACACTTTGGGTGGAACTATTTGCCAATGGGATTGGGAAGGAAAATAGACCCAGAGCCAGGAAGGTGTAGAAGAACAGATGGAAAGAAATGGAGGTGCTCAAAAGAAGCGTATCCAGATTCAAAGTACTGTGAGAGGCACATGCACAGAGGGAAAAACCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAACACCGACAGCAACAAACACAGATGCTTCAACCCCCACAATCTTATCAATCACCAAACACAGTCCTGCACTAACCCCAACCACTCATTCTCTCTCTGTGTCCTCTCATGACACTTTCCATCATCACCACCCTCACTCCTTCCTCTACCACACCCCACCTTCAAGGCCTTCTTCTGCTTCTGCTTTTTCGTTCCAAGACAACAGTGCCCCCTTGTTCCTTGAAAATGGTTCTTCCTCTCACAATAACAACACTCACTGCAGGAACAGGTATGTCTATGGGCTGAAAGAGGAGGTGGATGAGCATGCTTTCTTCACTGAACCTTCTGGGACTATGAGAAGTTTCTCTGCTTCATCTATGGAAGATTCTTGGCAGCTAACACCACTGACTATAAGCTCCTCATCATCTTCAAAACAGAGGAGTTGCTCTGGTTTATCCAATGACAACAACACCGAGTACTCTTATTTGCAACTTCAGAGCCGCAATGACAACAACTCAAAGCAGCCACAGCAAGATCATGGTTGCTACATATCAGGAAGTGATATCAAATGTGAAACGTTCATGAAACTTGGGAAAGAGGAAGAAGAAGAACCTCAGAAAACCGTTCATCGCTTCTTTGATGAATGGCCACCACCCAAAAGCAGAGGATCATGGCTTGATTTGGATGACAAATCATCCACCACCCAGCTTTCAATTTCCATTCCCACATCGTCTCATGATTTTACAACTTTCAGTTCAAGAGATGGTTGA 1116 0.4489 MNARNRFPFTPSQWQELEHQALIYKYMASGISIPPDLLFTIKRSYIDSPLSSRLMSHQPQHFGWNYLPMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTPTATNTDASTPTILSITKHSPALTPTTHSLSVSSHDTFHHHHPHSFLYHTPPSRPSSASAFSFQDNSAPLFLENGSSSHNNNTHCRNRYVYGLKEEVDEHAFFTEPSGTMRSFSASSMEDSWQLTPLTISSSSSSKQRSCSGLSNDNNTEYSYLQLQSRNDNNSKQPQQDHGCYISGSDIKCETFMKLGKEEEEEPQKTVHRFFDEWPPPKSRGSWLDLDDKSSTTQLSISIPTSSHDFTTFSSRDG* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2470 371 MobiDBLite consensus disorder prediction 314 344 - -
Apr9g2470 371 SMART QLQ_2 7 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Apr9g2470 371 MobiDBLite consensus disorder prediction 314 332 - -
Apr9g2470 371 PANTHER GROWTH-REGULATING FACTOR 5 2 350 - -
Apr9g2470 371 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
Apr9g2470 371 Pfam QLQ 8 41 IPR014978 GO:0005524|GO:0005634|GO:0006355
Apr9g2470 371 Pfam WRC 77 119 IPR014977 -
Apr9g2470 371 PANTHER - 2 350 IPR031137 GO:0005634|GO:0006351|GO:0032502
Apr9g2470 371 ProSiteProfiles QLQ domain profile. 8 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2470 Apr-Chr9 32047512 32049253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2470 6 119 GRF Transcription Factor Family AT3G13960 69.298 2.30e-53 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Apr9g2470 WRC 7.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2470 - - gmx:100783524 598.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2470 9 32047512 32049253 Apr9g2470 9 32047512 32049253 ECH
Apr9g2470 9 32047512 32049253 Apr1g2404 1 33662462 33664004 PCT