Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2445 ATGTCCACTTCATCCGAGTATTCAGGGTTTTCCGGCCACCAGACCGCGAAGTCGCCGCCAGAGAAGTCTTCTTTCTCTCACACTTGTAGTCTGTTGAGCCAATACCTCAAGGAGAAGGGTACCTTTGGAGACCTTACCCTCGGGATGACTTGCACCGTCGAAACAAACGGTTCCCCTGAGACATCATGTCACTCTGCAACAACCATGGAGTTGCTCCCCGCAGGCATGGCATCACGAAACCTGACAACTATGGATTTCCTCTCCTCACACATTGCTTATCCTCGCTACTCAGAGGTTCCATCTATGGTCAACTCAAGGTCTATGCCGAAGGATCCTAAAGCTTCTCAGTTGACTATCTTTTATGCTGGCCAAGTTGTGGTATTTGATGATTTCCCTGCTGACAAAGTAGAGGAGATAATGTTATTAGCCAGCAAAGGAACCCCCCAAAGCCAGAACTCCTCTGCATATGCTCTCTCTCATACTCAGCCTTCAATTATTCCTAACATCGTCCCCCAAGCACAATCCAGCTCAATTGTTTGTGATCTGCCAATTGCTAGGAAAGCTTCACTTCATCGGTTCTTGGAGAAGAGGAAAGATAGAATTGCTGCTAAAGCGCCGTATCAAACAAGCAAGCCCATATATGCTCCTAGTAAGTCGGGTGAATCCACGCCGTGGTTTGGTTTAGGTGCTAAATCAACACAAATCTGA 708 0.4732 MSTSSEYSGFSGHQTAKSPPEKSSFSHTCSLLSQYLKEKGTFGDLTLGMTCTVETNGSPETSCHSATTMELLPAGMASRNLTTMDFLSSHIAYPRYSEVPSMVNSRSMPKDPKASQLTIFYAGQVVVFDDFPADKVEEIMLLASKGTPQSQNSSAYALSHTQPSIIPNIVPQAQSSSIVCDLPIARKASLHRFLEKRKDRIAAKAPYQTSKPIYAPSKSGESTPWFGLGAKSTQI* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2445 235 PANTHER PROTEIN TIFY 10A 19 229 - -
Apr9g2445 235 SMART tify_2 110 145 IPR010399 -
Apr9g2445 235 Pfam tify domain 112 144 IPR010399 -
Apr9g2445 235 ProSiteProfiles Tify domain profile. 110 145 IPR010399 -
Apr9g2445 235 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 19 229 IPR040390 -
Apr9g2445 235 MobiDBLite consensus disorder prediction 1 23 - -
Apr9g2445 235 Pfam Jas motif 183 208 IPR018467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2445 Apr-Chr9 31846676 31849082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2445 1 231 Tify Gene Family AT1G19180 41.379 2.34e-50 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Apr9g2445 tify 9.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2445 K13464 - gmx:100802800 329.331
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2445 9 31846676 31849082 Apr9g2445 9 31846676 31849082 ECH
Apr9g2445 9 31846676 31849082 Apr1g2431 1 33917408 33920049 PCT