Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2444 ATGCAGTCGCAGAGGTTAAGGCAGCATGCCATGATGCAGCACTCTCTCTATCACCACCCGGCCCTCCTAACTCCTCCTCAGATAGAGCCTATCTTGAGTGGAAATCTGCCTCCTGGCTTTGATTCGAGTACATGCCGCAGTGTTTATGTTGGCAACATTCATCCTCAAGTTACAGAAGCCCTTCTTCAAGAGCTATTTTCAAATGCAGGTGCCCTTGAAGGATGCAAGCTTATTAGGAAAGAGAAGTCATCCTATGGCTTTGTGGACTACTTTGATCGCAGTTCAGCCGCATTTGCTATCGTAACTCTCAATGGGAGGAATATTTTTGGGCAGCCTATTAAAGTTAACTGGGCTTATGCTAGCAGCCAGAGAGAGGATACTTCAGGTCACTTTAATATTTTTGTCGGTGACCTTAGTCCTGAGGTCACTGATGCAACACTGTATGCTTGCTTCTGTGTATACCCTAGTTGCTCTGATGCAAGGGTAATGTGGGATCTGAAGACAGGCCGTTCCAGGGGATTTGGCTTTGTTTCTTTCCGGAATCAGCAGGATGCCCAAAGTGCCATAAATGATTTAACTGGAAAATGGCTTGGAAGTCGACAGATTCGTTGTAATTGGGCCACAAAAGGGGCCAATGCCAATGATGAAAAGCAGAGTTCAGATTCTAAAAGTGTTGTGGAGTTAACTAATGGAACATCCGATGGCCAGGAAATAACGAATGATGACACTCCAGAGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAGGTTACTTCTGTTGATCTCCATCAACATTTTCATGCTCTTGGTACTGGAACTATTGAAGATGTTAGGGTGCAGCGAGACAAAGGTTTTGGGTTTGTAAGATACAGTACACATGCTGAAGCAGCTCGTGCTATACAAATGGGTAATGCTCAAGTTCTCTTTGGCAAGCCGATCAAGTGTTCATGGGGTAGCAAGCCTACTCCTCCTGGAACAGCATCTACGCCCCTTCCTCCACCTGCATCTGCAAATGTTGCAGGCTTTTCACTTGCTAGTCTTGCAGCATATGAACGCCAAATGGCTTTGAGTAAAATGGGTGGTCCACATGCTCTTATGCATCAGCAAGGTCAACATTCCCTAAAGCAGGCAGCCATGGGCATCGGTGCTCCTGGGGCCGGTTATGATGCAAGGTTCCAGAGTGTTGCGACCACCCAGCACCTAATGTATTATCAGTAA 1233 0.4607 MQSQRLRQHAMMQHSLYHHPALLTPPQIEPILSGNLPPGFDSSTCRSVYVGNIHPQVTEALLQELFSNAGALEGCKLIRKEKSSYGFVDYFDRSSAAFAIVTLNGRNIFGQPIKVNWAYASSQREDTSGHFNIFVGDLSPEVTDATLYACFCVYPSCSDARVMWDLKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGANANDEKQSSDSKSVVELTNGTSDGQEITNDDTPEKNPQYTTVYVGNLAPEVTSVDLHQHFHALGTGTIEDVRVQRDKGFGFVRYSTHAEAARAIQMGNAQVLFGKPIKCSWGSKPTPPGTASTPLPPPASANVAGFSLASLAAYERQMALSKMGGPHALMHQQGQHSLKQAAMGIGAPGAGYDARFQSVATTQHLMYYQ* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2444 410 SUPERFAMILY RNA-binding domain, RBD 35 124 IPR035979 GO:0003676
Apr9g2444 410 Gene3D - 230 329 IPR012677 -
Apr9g2444 410 Gene3D - 39 124 IPR012677 -
Apr9g2444 410 SUPERFAMILY RNA-binding domain, RBD 242 330 IPR035979 GO:0003676
Apr9g2444 410 SMART rrm1_1 47 116 IPR000504 GO:0003723
Apr9g2444 410 SMART rrm1_1 132 205 IPR000504 GO:0003723
Apr9g2444 410 SMART rrm1_1 252 321 IPR000504 GO:0003723
Apr9g2444 410 SUPERFAMILY RNA-binding domain, RBD 124 217 IPR035979 GO:0003676
Apr9g2444 410 CDD RRM1_TIA1_like 48 118 - -
Apr9g2444 410 MobiDBLite consensus disorder prediction 211 247 - -
Apr9g2444 410 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 120 IPR000504 GO:0003723
Apr9g2444 410 Gene3D - 125 223 IPR012677 -
Apr9g2444 410 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 131 209 IPR000504 GO:0003723
Apr9g2444 410 CDD RRM3_TIA1_like 251 325 - -
Apr9g2444 410 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 251 325 IPR000504 GO:0003723
Apr9g2444 410 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 253 319 IPR000504 GO:0003723
Apr9g2444 410 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 114 IPR000504 GO:0003723
Apr9g2444 410 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 133 203 IPR000504 GO:0003723
Apr9g2444 410 PANTHER NUCLEOLYSIN TIAR-LIKE PROTEIN 3 407 - -
Apr9g2444 410 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 3 407 - -
Apr9g2444 410 CDD RRM2_PUB1 132 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2444 Apr-Chr9 31840390 31845075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2444 47 325 Eukaryotic Initiation Factors Gene Family AT2G23350 31.379 1.02e-28 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2444 K13201 - gmx:100813736 767.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2444 9 31840390 31845075 Apr9g2444 9 31840390 31845075 ECH