Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2441 ATGGTGAAGCCGAGCAATGAAAGTGAAGAGCAAAGCAATCTCAAGTACAAAGGAGTTCGAAAGAGAAAGTGGGGCAAATGGGTATCTGAAATCAGATTACCCAACAGTCGCCAGAGAATTTGGTTGGGATCCTACGATTCCGCCGAAAAGGCAGCGCTTGCTTTTGATGCGGCAATGTTCTGCTTACGTGGCCCCAATGCTAAGTTTAATTTCCCTAATAACCCACCCGATATAGCGGCCAGCAGCTCCATGACACCCTCACAAATTCGGATCGCCGCTGCCAGATTCGCAAACTCAAGGGTCCATGAGGGGGATTTGGGTCAACCCAAATTGTTGCCTATGGAATGTTCCTCAGAGGGGACAACCTTACAAATGGAATCTCGGTCGCCTTCTATTTCGGAAAGGACTATCCAAAAGGACAGTGACGTCACTCTCAATGGTTCGGCTCTGGATTTGTTCACGCCCAATGGGTTGGGTAATCATGTACCCGATTACGGGAATTTCCCTGGTTTTGATAATTTGAGTGGTGATTTTTACATGCCGCAAATGCCTAGTGTTAATTATGGAGAAGAAAACATGGATGGGTTGCTAGTTGATGACTCTTTCTTGTGGAGTTTTTGA 621 0.4638 MVKPSNESEEQSNLKYKGVRKRKWGKWVSEIRLPNSRQRIWLGSYDSAEKAALAFDAAMFCLRGPNAKFNFPNNPPDIAASSSMTPSQIRIAAARFANSRVHEGDLGQPKLLPMECSSEGTTLQMESRSPSISERTIQKDSDVTLNGSALDLFTPNGLGNHVPDYGNFPGFDNLSGDFYMPQMPSVNYGEENMDGLLVDDSFLWSF* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2441 206 CDD AP2 15 74 IPR001471 GO:0003700|GO:0006355
Apr9g2441 206 ProSiteProfiles AP2/ERF domain profile. 15 72 IPR001471 GO:0003700|GO:0006355
Apr9g2441 206 Pfam AP2 domain 15 64 IPR001471 GO:0003700|GO:0006355
Apr9g2441 206 SMART rav1_2 15 78 IPR001471 GO:0003700|GO:0006355
Apr9g2441 206 PRINTS Ethylene responsive element binding protein signature 16 27 IPR001471 GO:0003700|GO:0006355
Apr9g2441 206 PRINTS Ethylene responsive element binding protein signature 38 54 IPR001471 GO:0003700|GO:0006355
Apr9g2441 206 SUPERFAMILY DNA-binding domain 15 73 IPR016177 GO:0003677
Apr9g2441 206 Gene3D AP2/ERF domain 15 73 IPR036955 GO:0003700|GO:0006355
Apr9g2441 206 PANTHER TRANSCRIPTION FACTOR AP2-EREBP FAMILY-RELATED 3 206 - -
Apr9g2441 206 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 3 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2441 Apr-Chr9 31821922 31822930 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2441 15 206 AP2-EREBP Transcription Factor Family AT1G19210 48.259 2.23e-51 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Apr9g2441 AP2 2.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2441 - - gmx:732656 277.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2441 9 31821922 31822930 Apr9g2441 9 31821922 31822930 ECH