LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr9g2440	ATGAAGGCTCCATCTAATGGCTACTTGCCAAATTCAGGCGAAGGGGAAAGGAAGACAATCAATTCAGAGCTATGGCATGCTTGTGCTGGACCCTTGGTTTCTTTGCCTCCTGTTGGAAGTCTTGTGGTTTATTTCCCACAAGGACATAGTGAGCAAGTTGCAGCGTCCATGCAAAAGGAGACTGATTTCATACCCAGCTATCCTAACCTTCCATCCAAGTTGATTTGCATGCTTCACAATGTTGCCCTGCATGCTGATCCTGAAACTGACGAAGTCTATGCCCAGATGACCCTTCAACCTGTAAACAAATATGAAAAAGAAGCAATACTGGCATCAGACATGGGTCTCAAACAAAGCCGTCAACCTACTGAATTCTTTTGCAAAACTCTTACAGCTAGTGACACAAGTACTCATGGTGGATTTTCTGTGCCTCGTAGAGCAGCTGAGAAAATATTCCCTCCTTTGGATTATTCAATGCAACCTCCTGCTCAGGAACTTGTCGCCAAAGATTTGCATGACAACACATGGGCATTTAGACATATCTATAGGGGACAACCAAAGAGGCATCTATTGACTACTGGTTGGAGTGTATTTGTCAGCACAAAAAGACTGTTTGCTGGAGATTCTGTTCTTTTTATCAGAGATGAGAAACAACAACTTCTTTTAGGTATAAGGCGTGCTAATCGACAGCAGCCAGCACTCTCTTCATCAGTAATATCCAGTGACAGCATGCATATTGGCATTCTTGCTGCTGCAGCTCATGCTGCTGCAAATAACAGTCCATTTACTATATTTTACAACCCAAGGGCCAGCCCCTCTGAATTTGTTATTCCATTGGCCAAGTATAACAAAGCCATGTACACTCAAGTTTCTCTTGGAATGAGATTTAGAATGATGTTTGAAACAGAGGAGTCTGGAGTACGCAGATATATGGGTACAATCACTGGGATCAGTGACTTGGATCCTGTCCGATGGAAAAATTCTCAGTGGCGCAATCTTCAGGTTGGATGGGATGAATCAACAGCTGGCGAGCGCCCCAGCAGAGTTTCAATTTGGGAAATTGAACCAGTTGTGACGCCTTTCTACATTTGTCCACCTCCATTTTTTAGGCCCAAGTTCCCCAGGCAACCAGGAATGCCAGATGATGAGTCAGATATAGAAAATGCTTTCAAGAGGGCTATGCCATGGCTTGGAGATGACTTTGGCATGAAGGATGCCTCAAGTTCACTCTTTCCTGGTTTGAGTTTAGTGCAGTGGATGAGCATGCAGCAGAACAATCAGCTCTCTGCTGCTCCATCAGGATGTTTCCCATCCATGCTTCCATCTAATACTCTTCATGCTAACCTTACCCCTGATGACCCATCCAAGCTATTGAGCTTTCAAACTCCTGTCCTCTCTGCACCAAATCTTCAATTTAACAAACCTAATTTACCAAATCAAATCAACCAATTGCAGCAGTCCCCAGTATCATGGCCTCAGCAGCAGCAACAGTTGCAACAACAGCAACAGCAACAACAGTTACAGCAGCAGCAACAGCAACAACAACAGCAGCAGCAGCAGTTACAGCAGCAACAACAGCAGGTGCAGCACCAGCAACAACAGCAGCTACAGTCATTGTTGCAAATACCAATGAACCAGCTCCAGCAGCAGAGGCAACAACAGCTGCCTGAACCACAAAACCTGCCATTGCTGCATCAACTGCCTCAGCAGCCTCAGAAACAGCAACAGTCAAGTCAACATGCCACCATCATGAATAATGGGGTAGTTGCTTCTAACCAGATTTCAAATCAGTTTGTACAACCACAAGGAGCCTATACTCAGCTTCAGCAACAACAATCACTCCCAGGAGGAATCCCACCCCAGCAAAGTATCCAGTCGGCTAACAAGAATACATTCCCATTGACATCCTTACCACAAGATTCACAATTTCAGCAACAGATAGACCAGCAAGCTAGTCTCTTACAAAGGCAGCAACAACAGACACACTTGCAACAATCTCCACTGCAGTTATTGCAACAAAACCTGCCACAAAGGGCACCACAACTGCCACCGGTGACTCAAATGTTACAGCAAAACCCCTCGGAGCAACACCACCTACAGTTGCTACAGACATTGCAGCAGCAGCAACAACAGCAACATCTTTCCACATCTAGCCCACTTTTGCAGTCTCAGCTTCTACAGCAACAAAACACCCACCAACAAAGCCAGCAATTGCCGCCCCTGCCTGTATCTCAGCATATTCCTCAACAGTTTGGCAATCACCCATTGTCAGCAGAGAAGCTTCTCAACAGCAACTTCTCCTCTTCAACTCTCATGCAATCACAACATCTTCCTGTAAACCAACCCCAAAACACACAAAAATCACTTACAATTACTAGAGCTCCCTCTACACTTACAGATGGAGATGCTCCATCATGCTCAACCTCTCCATCTACTAATAACTGCCAGATATCTCCCCCAAACCTCCTGAAAAGAAATCAGCAACTACCAGCCACATTAGGGGGGAGTTTGGTAGTTGAGCCCACTAGTAATCTGATACAAGAGCTTCAGAGTAAGCCTGATGTCCAGATTAAACATGAGTTACCCAATATAAAAGGACCAGATCAGTTGAAATATAAAGGGGCAATTACTGATCAACTGGAAGCTTCTTCTTCGGGAACATCTTATTGTCTTGATCCTGGTAATGTCCAGCAGAACTTACCACTTTCCAACTTCTGCATGGAAGGGGATGTCCAATCACACCCTAGAAACAGTCTACCATTTGACTCTAATCTTGATGGTCTAACACCTGATACTATGCTTTTAAGGGGATATGACTCTCCGAAAGATCTTCAAAATTTGTTGTCTAACTATGGTGGTGCTCCAAGAGACATTGAAACTGAGCTGTCAACTGCTGACATCAGCTCACAGTCGTTTGGAGTGCCAAACATGCCTTTTAAGCCTGGTTGCTCAAGTGATGCTGGCATAAATGATACTGGTGTTTTGAATAATAGCAGCTTGCGAGCTAACCAAACTCAGCGAATGCGAACATATACCAAGGTTCAAAAGCGTGGCTCTGTCGGAAGATGCATTGATGTCACTCGTTACAAGGGCTATGATGAACTACGGCATGATTTAGCTCGAATGTTTGGGATTGAAGGGCAACTAGAAGATCCTCAAAGGACTGACTGGAAATTAGTATATGTAGATCATGAAAATGACATTCTTCTTGTTGGTGATGACCCTTGGGATGAATTTGTAACGTGTGTCCAGAGCATAAAAATATTGTCATCTGCTGAAGTGCAGCAGATGAGTTTGGATGGGGATTTAGGTGGTGGTACTGTTCCAATCCCCAATCAAGCTTGCAGCGGTGACAGTGGCAATGCATGGAGGGGCCAGTATGATGATAACTCTGCAGCCTCATTTAACAGGTAA	3414	0.4461	MKAPSNGYLPNSGEGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKETDFIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYEKEAILASDMGLKQSRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQELVAKDLHDNTWAFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQQLLLGIRRANRQQPALSSSVISSDSMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGERPSRVSIWEIEPVVTPFYICPPPFFRPKFPRQPGMPDDESDIENAFKRAMPWLGDDFGMKDASSSLFPGLSLVQWMSMQQNNQLSAAPSGCFPSMLPSNTLHANLTPDDPSKLLSFQTPVLSAPNLQFNKPNLPNQINQLQQSPVSWPQQQQQLQQQQQQQQLQQQQQQQQQQQQQLQQQQQQVQHQQQQQLQSLLQIPMNQLQQQRQQQLPEPQNLPLLHQLPQQPQKQQQSSQHATIMNNGVVASNQISNQFVQPQGAYTQLQQQQSLPGGIPPQQSIQSANKNTFPLTSLPQDSQFQQQIDQQASLLQRQQQQTHLQQSPLQLLQQNLPQRAPQLPPVTQMLQQNPSEQHHLQLLQTLQQQQQQQHLSTSSPLLQSQLLQQQNTHQQSQQLPPLPVSQHIPQQFGNHPLSAEKLLNSNFSSSTLMQSQHLPVNQPQNTQKSLTITRAPSTLTDGDAPSCSTSPSTNNCQISPPNLLKRNQQLPATLGGSLVVEPTSNLIQELQSKPDVQIKHELPNIKGPDQLKYKGAITDQLEASSSGTSYCLDPGNVQQNLPLSNFCMEGDVQSHPRNSLPFDSNLDGLTPDTMLLRGYDSPKDLQNLLSNYGGAPRDIETELSTADISSQSFGVPNMPFKPGCSSDAGINDTGVLNNSSLRANQTQRMRTYTKVQKRGSVGRCIDVTRYKGYDELRHDLARMFGIEGQLEDPQRTDWKLVYVDHENDILLVGDDPWDEFVTCVQSIKILSSAEVQQMSLDGDLGGGTVPIPNQACSGDSGNAWRGQYDDNSAASFNR*	1138

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr9g2440	1137	MobiDBLite	consensus disorder prediction	726	751	-	-
	Apr9g2440	1137	SUPERFAMILY	CAD & PB1 domains	1022	1087	-	-
	Apr9g2440	1137	MobiDBLite	consensus disorder prediction	606	626	-	-
	Apr9g2440	1137	Pfam	Auxin response factor	252	334	IPR010525	GO:0003677\|GO:0005634\|GO:0006355\|GO:0009725
	Apr9g2440	1137	Gene3D	-	1004	1098	-	-
	Apr9g2440	1137	CDD	B3_DNA	125	217	IPR003340	GO:0003677
	Apr9g2440	1137	Pfam	B3 DNA binding domain	126	227	IPR003340	GO:0003677
	Apr9g2440	1137	Pfam	AUX/IAA family	1002	1095	IPR033389	-
	Apr9g2440	1137	Gene3D	-	123	227	IPR015300	-
	Apr9g2440	1137	ProSiteProfiles	PB1 domain profile.	1009	1102	IPR000270	GO:0005515

Showing 1 to 10 of 20 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr9g2440	Apr-Chr9	31808628	31816364	Dispersed/Wgd

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr9g2440	1	487	B3 DNA Binding Superfamily	AT1G19220	84.394	0.0	851

Showing 1 to 1 of 1 entries

Transcription factors information

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3-ARF	Apr9g2440		AUX_IAA	4e-09	CL0072

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr9g2440	K14486		-	gmx:100805456	930.243

Showing 1 to 1 of 1 entries

Event-related genes

Show entries

Search:

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Apr9g2440	9	31808628	31816364	Apr9g2440	9	31808628	31816364	ECH
	Apr9g2440	9	31808628	31816364	Apr1g2435	1	33953524	33962452	PCT

Showing 1 to 2 of 2 entries