Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2440 ATGAAGGCTCCATCTAATGGCTACTTGCCAAATTCAGGCGAAGGGGAAAGGAAGACAATCAATTCAGAGCTATGGCATGCTTGTGCTGGACCCTTGGTTTCTTTGCCTCCTGTTGGAAGTCTTGTGGTTTATTTCCCACAAGGACATAGTGAGCAAGTTGCAGCGTCCATGCAAAAGGAGACTGATTTCATACCCAGCTATCCTAACCTTCCATCCAAGTTGATTTGCATGCTTCACAATGTTGCCCTGCATGCTGATCCTGAAACTGACGAAGTCTATGCCCAGATGACCCTTCAACCTGTAAACAAATATGAAAAAGAAGCAATACTGGCATCAGACATGGGTCTCAAACAAAGCCGTCAACCTACTGAATTCTTTTGCAAAACTCTTACAGCTAGTGACACAAGTACTCATGGTGGATTTTCTGTGCCTCGTAGAGCAGCTGAGAAAATATTCCCTCCTTTGGATTATTCAATGCAACCTCCTGCTCAGGAACTTGTCGCCAAAGATTTGCATGACAACACATGGGCATTTAGACATATCTATAGGGGACAACCAAAGAGGCATCTATTGACTACTGGTTGGAGTGTATTTGTCAGCACAAAAAGACTGTTTGCTGGAGATTCTGTTCTTTTTATCAGAGATGAGAAACAACAACTTCTTTTAGGTATAAGGCGTGCTAATCGACAGCAGCCAGCACTCTCTTCATCAGTAATATCCAGTGACAGCATGCATATTGGCATTCTTGCTGCTGCAGCTCATGCTGCTGCAAATAACAGTCCATTTACTATATTTTACAACCCAAGGGCCAGCCCCTCTGAATTTGTTATTCCATTGGCCAAGTATAACAAAGCCATGTACACTCAAGTTTCTCTTGGAATGAGATTTAGAATGATGTTTGAAACAGAGGAGTCTGGAGTACGCAGATATATGGGTACAATCACTGGGATCAGTGACTTGGATCCTGTCCGATGGAAAAATTCTCAGTGGCGCAATCTTCAGGTTGGATGGGATGAATCAACAGCTGGCGAGCGCCCCAGCAGAGTTTCAATTTGGGAAATTGAACCAGTTGTGACGCCTTTCTACATTTGTCCACCTCCATTTTTTAGGCCCAAGTTCCCCAGGCAACCAGGAATGCCAGATGATGAGTCAGATATAGAAAATGCTTTCAAGAGGGCTATGCCATGGCTTGGAGATGACTTTGGCATGAAGGATGCCTCAAGTTCACTCTTTCCTGGTTTGAGTTTAGTGCAGTGGATGAGCATGCAGCAGAACAATCAGCTCTCTGCTGCTCCATCAGGATGTTTCCCATCCATGCTTCCATCTAATACTCTTCATGCTAACCTTACCCCTGATGACCCATCCAAGCTATTGAGCTTTCAAACTCCTGTCCTCTCTGCACCAAATCTTCAATTTAACAAACCTAATTTACCAAATCAAATCAACCAATTGCAGCAGTCCCCAGTATCATGGCCTCAGCAGCAGCAACAGTTGCAACAACAGCAACAGCAACAACAGTTACAGCAGCAGCAACAGCAACAACAACAGCAGCAGCAGCAGTTACAGCAGCAACAACAGCAGGTGCAGCACCAGCAACAACAGCAGCTACAGTCATTGTTGCAAATACCAATGAACCAGCTCCAGCAGCAGAGGCAACAACAGCTGCCTGAACCACAAAACCTGCCATTGCTGCATCAACTGCCTCAGCAGCCTCAGAAACAGCAACAGTCAAGTCAACATGCCACCATCATGAATAATGGGGTAGTTGCTTCTAACCAGATTTCAAATCAGTTTGTACAACCACAAGGAGCCTATACTCAGCTTCAGCAACAACAATCACTCCCAGGAGGAATCCCACCCCAGCAAAGTATCCAGTCGGCTAACAAGAATACATTCCCATTGACATCCTTACCACAAGATTCACAATTTCAGCAACAGATAGACCAGCAAGCTAGTCTCTTACAAAGGCAGCAACAACAGACACACTTGCAACAATCTCCACTGCAGTTATTGCAACAAAACCTGCCACAAAGGGCACCACAACTGCCACCGGTGACTCAAATGTTACAGCAAAACCCCTCGGAGCAACACCACCTACAGTTGCTACAGACATTGCAGCAGCAGCAACAACAGCAACATCTTTCCACATCTAGCCCACTTTTGCAGTCTCAGCTTCTACAGCAACAAAACACCCACCAACAAAGCCAGCAATTGCCGCCCCTGCCTGTATCTCAGCATATTCCTCAACAGTTTGGCAATCACCCATTGTCAGCAGAGAAGCTTCTCAACAGCAACTTCTCCTCTTCAACTCTCATGCAATCACAACATCTTCCTGTAAACCAACCCCAAAACACACAAAAATCACTTACAATTACTAGAGCTCCCTCTACACTTACAGATGGAGATGCTCCATCATGCTCAACCTCTCCATCTACTAATAACTGCCAGATATCTCCCCCAAACCTCCTGAAAAGAAATCAGCAACTACCAGCCACATTAGGGGGGAGTTTGGTAGTTGAGCCCACTAGTAATCTGATACAAGAGCTTCAGAGTAAGCCTGATGTCCAGATTAAACATGAGTTACCCAATATAAAAGGACCAGATCAGTTGAAATATAAAGGGGCAATTACTGATCAACTGGAAGCTTCTTCTTCGGGAACATCTTATTGTCTTGATCCTGGTAATGTCCAGCAGAACTTACCACTTTCCAACTTCTGCATGGAAGGGGATGTCCAATCACACCCTAGAAACAGTCTACCATTTGACTCTAATCTTGATGGTCTAACACCTGATACTATGCTTTTAAGGGGATATGACTCTCCGAAAGATCTTCAAAATTTGTTGTCTAACTATGGTGGTGCTCCAAGAGACATTGAAACTGAGCTGTCAACTGCTGACATCAGCTCACAGTCGTTTGGAGTGCCAAACATGCCTTTTAAGCCTGGTTGCTCAAGTGATGCTGGCATAAATGATACTGGTGTTTTGAATAATAGCAGCTTGCGAGCTAACCAAACTCAGCGAATGCGAACATATACCAAGGTTCAAAAGCGTGGCTCTGTCGGAAGATGCATTGATGTCACTCGTTACAAGGGCTATGATGAACTACGGCATGATTTAGCTCGAATGTTTGGGATTGAAGGGCAACTAGAAGATCCTCAAAGGACTGACTGGAAATTAGTATATGTAGATCATGAAAATGACATTCTTCTTGTTGGTGATGACCCTTGGGATGAATTTGTAACGTGTGTCCAGAGCATAAAAATATTGTCATCTGCTGAAGTGCAGCAGATGAGTTTGGATGGGGATTTAGGTGGTGGTACTGTTCCAATCCCCAATCAAGCTTGCAGCGGTGACAGTGGCAATGCATGGAGGGGCCAGTATGATGATAACTCTGCAGCCTCATTTAACAGGTAA 3414 0.4461 MKAPSNGYLPNSGEGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKETDFIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYEKEAILASDMGLKQSRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQELVAKDLHDNTWAFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQQLLLGIRRANRQQPALSSSVISSDSMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGERPSRVSIWEIEPVVTPFYICPPPFFRPKFPRQPGMPDDESDIENAFKRAMPWLGDDFGMKDASSSLFPGLSLVQWMSMQQNNQLSAAPSGCFPSMLPSNTLHANLTPDDPSKLLSFQTPVLSAPNLQFNKPNLPNQINQLQQSPVSWPQQQQQLQQQQQQQQLQQQQQQQQQQQQQLQQQQQQVQHQQQQQLQSLLQIPMNQLQQQRQQQLPEPQNLPLLHQLPQQPQKQQQSSQHATIMNNGVVASNQISNQFVQPQGAYTQLQQQQSLPGGIPPQQSIQSANKNTFPLTSLPQDSQFQQQIDQQASLLQRQQQQTHLQQSPLQLLQQNLPQRAPQLPPVTQMLQQNPSEQHHLQLLQTLQQQQQQQHLSTSSPLLQSQLLQQQNTHQQSQQLPPLPVSQHIPQQFGNHPLSAEKLLNSNFSSSTLMQSQHLPVNQPQNTQKSLTITRAPSTLTDGDAPSCSTSPSTNNCQISPPNLLKRNQQLPATLGGSLVVEPTSNLIQELQSKPDVQIKHELPNIKGPDQLKYKGAITDQLEASSSGTSYCLDPGNVQQNLPLSNFCMEGDVQSHPRNSLPFDSNLDGLTPDTMLLRGYDSPKDLQNLLSNYGGAPRDIETELSTADISSQSFGVPNMPFKPGCSSDAGINDTGVLNNSSLRANQTQRMRTYTKVQKRGSVGRCIDVTRYKGYDELRHDLARMFGIEGQLEDPQRTDWKLVYVDHENDILLVGDDPWDEFVTCVQSIKILSSAEVQQMSLDGDLGGGTVPIPNQACSGDSGNAWRGQYDDNSAASFNR* 1138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2440 1137 MobiDBLite consensus disorder prediction 726 751 - -
Apr9g2440 1137 SUPERFAMILY CAD & PB1 domains 1022 1087 - -
Apr9g2440 1137 MobiDBLite consensus disorder prediction 606 626 - -
Apr9g2440 1137 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Apr9g2440 1137 Gene3D - 1004 1098 - -
Apr9g2440 1137 CDD B3_DNA 125 217 IPR003340 GO:0003677
Apr9g2440 1137 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Apr9g2440 1137 Pfam AUX/IAA family 1002 1095 IPR033389 -
Apr9g2440 1137 Gene3D - 123 227 IPR015300 -
Apr9g2440 1137 ProSiteProfiles PB1 domain profile. 1009 1102 IPR000270 GO:0005515
Apr9g2440 1137 Gene3D - 289 360 - -
Apr9g2440 1137 MobiDBLite consensus disorder prediction 795 819 - -
Apr9g2440 1137 SMART B3_2 126 228 IPR003340 GO:0003677
Apr9g2440 1137 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Apr9g2440 1137 MobiDBLite consensus disorder prediction 1114 1137 - -
Apr9g2440 1137 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 1123 IPR044835 GO:0003677|GO:0006355|GO:0009725
Apr9g2440 1137 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Apr9g2440 1137 Coils Coil 493 534 - -
Apr9g2440 1137 PANTHER AUXIN RESPONSE FACTOR 19 1 1123 - -
Apr9g2440 1137 MobiDBLite consensus disorder prediction 631 650 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2440 Apr-Chr9 31808628 31816364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2440 1 487 B3 DNA Binding Superfamily AT1G19220 84.394 0.0 851
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Apr9g2440 AUX_IAA 4e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2440 K14486 - gmx:100805456 930.243
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2440 9 31808628 31816364 Apr9g2440 9 31808628 31816364 ECH
Apr9g2440 9 31808628 31816364 Apr1g2435 1 33953524 33962452 PCT