Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2417 ATGGCGTTTCAGGATTTCGACCTCATCTCAGAAAGGCGAAGCAACGAAAAGAGACAAAAGCTGAGGAAGAGGATCCTAATCGGTGTGGTTTCTTCCATTGTCCTTGTGGGTCTGATAGGTGCAGCATCATTCGTTGTTGTTAGAAATGACTCTGATGATAACACCAATGGTGACCAGAAGCATGCACCTGCCACTGCCAGCAGCAAACAACACGTGTCAACTTCAGAGAAGATGGTGAAGTTGGTGTGTAGCTCTGCAAATTACAAAGATAAATGTGAAGGACCCCTTAACAAGGCCATGCAGGATGACCCAAAACTCTCACACCCCAAAGACCTTCTCAAGGTCTATGTGAAATATGCTCAAGATGAGGTTGACAAGGCTTTTGATGAAACCGTCTCTATGAAGTTCCAATCTGAGGAAGAGAAAGCAGCATATGAAGATTGCAAGAAGCTGTTTAAGGATGCCAAGGATGACTTAGAAACATCTCTCAATGAACTTACAAAAATTGAGTTGAAATCAATGTCTCAAAGAACTCCTGATTTGAATAGCTGGCTCAGTGCTGCTATGACTTTCCAACAAAACTGCGTTGATGGTTTTCCTGAAGGAAAATTGAAAACTGATCTTCAAAATCTCTTTACAGATTCTAAGGAATTTCTCAGCAACTCCCTTGCCATTTTGTCTCAGGTAGCCTCCGTCCTCTCCACATTCCAGGCAATTGCGCGTGGCCGTTTGTTGCTATCTGAGAACTCCAATTCCCCACTTGCTTCTCTCGACAAAAAAGATGGCTTTCCTTCTTGGATTAGCCATGAGGACAGAAGATTTTTGAAGGCTTTGGATAACAAACCTACACCTAATGTTACTGTGGCAAAGGATGGAAGTGGAAACTTCAAAACCATCTCTGAAGCTTTGAATGCCATCCCTCAAACTTACGATGGACGGTATGTGATTTATGTTAAAGAAGGAGTGTACGATGAGACAGTGCTAGTAACAAAGCAAATGCAAAATGTAACCATGTATGGTGATGGATCCCAAAAGAGCATCATCACTGGCAGCAAAAACTTTAGGGACGGAGTCACGACTTACCAAACTGCAAGTTTTGCCGTAGATGGAGACGGATTCTTTGGCCTTGCGATGGGATTCAGAAACACCGCAGGGCCTGATGGGCATCAAGCAGTGGCTGCAAGAGTGCAAGGAGAACGTGCAGTATTTGCCAACTGCCGTTTTGAGGGCTACCAAGACACTCTATATGTCCAAGCACACAGACAGTTCTACCGTAGCTGCATAGTTTCAGGTACAATTGATTTCATCTTTGGTAATGCAGCTGTTGTGTTCCAGAACTGCATCATGATTGTTAGGAAGCCACTGGACAACCAGCAGAACTTGGTGACAGCTCAAGGTAGACTGGACAACAAACAAGAAACAGGAATTGTTCTACAAAAGTGTGTGATCAAACCTGATGACTCACTTGTTCCAGTTAAGGACAAGATCAAGAGCTACCTCGGTAGGCCTTGGAAGGAGTACTCAAAAACCATTGTTATGGAAACTGAAATAGGTGATTTTATTCACCCTGATGGGTGGAAAGAATGGATGGGAGACTTTGCTCTCAAGACATTGTACTATGGTGAGTACAATAACACAGGACCTGGTGCCAGCACTAGTGCAAGGGTCAAGTGGCCTGGTTGCAAAGTCATCGACAGGGAGGAAGCTACCAAATATACTCCAGGGATCTTCTTGCGAGGCACATGGATCCAAGCCACAGGTGTGCCCGCTGTGCAAGGCTTGTACGGTTAA 1791 0.4444 MAFQDFDLISERRSNEKRQKLRKRILIGVVSSIVLVGLIGAASFVVVRNDSDDNTNGDQKHAPATASSKQHVSTSEKMVKLVCSSANYKDKCEGPLNKAMQDDPKLSHPKDLLKVYVKYAQDEVDKAFDETVSMKFQSEEEKAAYEDCKKLFKDAKDDLETSLNELTKIELKSMSQRTPDLNSWLSAAMTFQQNCVDGFPEGKLKTDLQNLFTDSKEFLSNSLAILSQVASVLSTFQAIARGRLLLSENSNSPLASLDKKDGFPSWISHEDRRFLKALDNKPTPNVTVAKDGSGNFKTISEALNAIPQTYDGRYVIYVKEGVYDETVLVTKQMQNVTMYGDGSQKSIITGSKNFRDGVTTYQTASFAVDGDGFFGLAMGFRNTAGPDGHQAVAARVQGERAVFANCRFEGYQDTLYVQAHRQFYRSCIVSGTIDFIFGNAAVVFQNCIMIVRKPLDNQQNLVTAQGRLDNKQETGIVLQKCVIKPDDSLVPVKDKIKSYLGRPWKEYSKTIVMETEIGDFIHPDGWKEWMGDFALKTLYYGEYNNTGPGASTSARVKWPGCKVIDREEATKYTPGIFLRGTWIQATGVPAVQGLYG* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2417 596 Gene3D - 279 594 IPR012334 -
Apr9g2417 596 Gene3D Invertase/pectin methylesterase inhibitor family protein 75 230 IPR035513 -
Apr9g2417 596 SMART PMEI_2 74 225 IPR006501 GO:0004857
Apr9g2417 596 ProSitePatterns Pectinesterase signature 2. 429 438 IPR033131 -
Apr9g2417 596 Pfam Plant invertase/pectin methylesterase inhibitor 78 225 IPR006501 GO:0004857
Apr9g2417 596 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 77 228 IPR035513 -
Apr9g2417 596 Pfam Pectinesterase 285 580 IPR000070 GO:0030599|GO:0042545
Apr9g2417 596 PANTHER PECTINESTERASE 14 594 - -
Apr9g2417 596 TIGRFAM PME_inhib: pectinesterase inhibitor domain 65 229 IPR006501 GO:0004857
Apr9g2417 596 CDD PMEI-like_3 81 231 - -
Apr9g2417 596 Coils Coil 152 172 - -
Apr9g2417 596 MobiDBLite consensus disorder prediction 53 73 - -
Apr9g2417 596 SUPERFAMILY Pectin lyase-like 283 593 IPR011050 -
Apr9g2417 596 PANTHER PECTINESTERASE 14 594 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2417 Apr-Chr9 31601589 31604026 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2417 1 595 Carbohydrate Esterase AT2G26450 45.933 0.0 577
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2417 - - gmx:100784679 947.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2417 9 31601589 31604026 Apr9g2417 9 31601589 31604026 ECH
Apr9g2417 9 31601589 31604026 Apr1g2458 1 34200969 34203335 PCT