Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2415 ATGGCTCTTCCTTCAACTAAGCAGCCACAAACATCACACACTCTCACATTCACCTTCTTAATCTTCCTACTTCTTCCACTCTGCACCCCACTGGGTGCTAACACAGATTTTTCGGGATCAGCATGCCTCAAAGTTTCTCCTACCCATTTTGGAGGCTCAGTGAGGGAAGTTATTAGCGCCTTACAAGAAATTTCATCCATTTTGTCACGCTTCTCCCATGGCTTTGGTAACTTCCGTCTTTCTAATGCCGTTACTGACTGTCTCGATTTGCTTGACTTTTCCTCTGACGTCCTTTCGTGGTCTCTCTCCGCTACTGAGAATCCCAAAGGGAAGAACAACAGTACTGGGAACCTAAGTGCTGATTTGAGGACATGGCTAAGTGCAGCACTTTCGAATCCAGAGACATGCATGGAGGGATTCGAAGGTACAAATAGTGTTGTGAAGGGTTTGATTTCAACTGGTCTTGGGCAAGTGATGACGTTGGTGAAGCAGCTTCTTACACAAGTGGTTCCTGTGAAAGATGAATTGGGTAGTGGGAAGGGGAAATTTCCTTCGTGGGTTAAACCGAGGGAAAGGAAGCTGGTACAGGCGAATGGGGTGGCTGCAGATGCGGTGGTGGCTGCAGATGGGACTGGGAACTACGCTACCATCATGGATGCGGTGGCGGCGGCACCAGATTATAGCATGAAGCGTTTTGTCATTTATGTGAAGAAGGGTGTTTATGTAGAGAATGTTGAGATAAAGAAGAAGAAGTGGAATATTATGATGGTTGGAGATGGGATGGATGCTACTGTAATCTCCGGTAACCGGAGCTTCATCGACGGCTGGACCACGTTCCGTTCACCTACCTTTGCTGTTAGTGGGAGAGGATTCATAGGAAGAGACATTTCCTTTCGGAACACCGCAGGTGCAGAGAAGCACCAAGCAGTGGCACTTAGATCAGACTCAGACCTTGCCGTATTCTACCGATGTGGGATCTTTGGATACCAAGACAGCCTCTACACTCACACAATGCGCCAATTCTTCAGAGAATGCAAGATCACTGGCACTGTTGATTTCATCTTTGGAGACGCCACTGCAGTGTTCCAAAACTGTTTGATCCAGCCCACCAAAGGGTTGCCAAATCAGAAGAACACGATCACAGCTCAAGGTAGAAAAGACCCAAATGAACCAACGGGTTTCTCATTCCAATTCTGTAACATCACTGCAGATTCTGCTCTTCTACCCTTAGTTAGCACCACCCAGACGTACTTGGGTAGGCCATGGAAGATTTATTCACGAACTGTTTTCATGCAATCGTACATGAGTGACGTGATAAGACCAGAAGGGTGGCTAGAATGGAATGGGAATTTTGCTTTGGATACATTGTACTATGCTGAGTACATGAACACTGGTCCAGGTGCTGGAGTAACTAACAGAGTGAATTGGCCAGGGTATCATGTATTAAATGATTCTAGCGTGGCCAGTAACTTCACCGTGGCTCAATTTATTGAGGGGAATCTATGGTTACCTTCCACGGGTGTGACCTACACTGCTGCATTCAATTAA 1548 0.4658 MALPSTKQPQTSHTLTFTFLIFLLLPLCTPLGANTDFSGSACLKVSPTHFGGSVREVISALQEISSILSRFSHGFGNFRLSNAVTDCLDLLDFSSDVLSWSLSATENPKGKNNSTGNLSADLRTWLSAALSNPETCMEGFEGTNSVVKGLISTGLGQVMTLVKQLLTQVVPVKDELGSGKGKFPSWVKPRERKLVQANGVAADAVVAADGTGNYATIMDAVAAAPDYSMKRFVIYVKKGVYVENVEIKKKKWNIMMVGDGMDATVISGNRSFIDGWTTFRSPTFAVSGRGFIGRDISFRNTAGAEKHQAVALRSDSDLAVFYRCGIFGYQDSLYTHTMRQFFRECKITGTVDFIFGDATAVFQNCLIQPTKGLPNQKNTITAQGRKDPNEPTGFSFQFCNITADSALLPLVSTTQTYLGRPWKIYSRTVFMQSYMSDVIRPEGWLEWNGNFALDTLYYAEYMNTGPGAGVTNRVNWPGYHVLNDSSVASNFTVAQFIEGNLWLPSTGVTYTAAFN* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2415 515 SUPERFAMILY Pectin lyase-like 200 511 IPR011050 -
Apr9g2415 515 Pfam Plant invertase/pectin methylesterase inhibitor 59 151 IPR006501 GO:0004857
Apr9g2415 515 ProSitePatterns Pectinesterase signature 2. 347 356 IPR033131 -
Apr9g2415 515 Gene3D Invertase/pectin methylesterase inhibitor family protein 42 170 IPR035513 -
Apr9g2415 515 ProSitePatterns Pectinesterase signature 1. 228 247 IPR018040 -
Apr9g2415 515 SMART PMEI_2 33 172 IPR006501 GO:0004857
Apr9g2415 515 CDD PMEI-like_4 14 172 - -
Apr9g2415 515 PANTHER PECTINESTERASE 46 176 - -
Apr9g2415 515 PANTHER PECTINESTERASE 178 513 - -
Apr9g2415 515 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 178 513 - -
Apr9g2415 515 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 46 176 - -
Apr9g2415 515 Gene3D - 197 514 IPR012334 -
Apr9g2415 515 Pfam Pectinesterase 203 500 IPR000070 GO:0030599|GO:0042545
Apr9g2415 515 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 54 161 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2415 Apr-Chr9 31592289 31595397 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2415 19 514 Carbohydrate Esterase AT3G43270 63.938 0.0 698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2415 9 31592289 31595397 Apr1g2460 1 34212030 34215811 PCT