Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2407 ATGGGCTTCTATGTTGAGGAACCTGTCTCAGGTTTGACGATAGGCCAAGCCATATATGAGGTTGCTCTAATCATTGCAATTCTGAGATGGGTCTTGTGCTTGGTTTTCAGAGTGATCAAAGACAGAAGAACACGCTCTCTTCACACCCCACATGAACCCTCTTCTCCTTCTTCTTCTTCATGCATGACAAGGGACAAAGAGAACACTCTCTTGTTAACCACCTTTGGTGAGATTGTGGAAAGACTACCACAAACAGAGGACACGTGTGCAGTTTGCTTGAACCAGCTGAAAATGGAAGATGAAGTTAGAGAACTGATGAACTGTTACCATGTGTTCCACAGAGAGTGCATAGACAAATGGTTGGAACATGATCATGAGAACCACAAATCCACTTGTCCACTGTGCAGAGCCCCTTTGTTGAGTTGTTGTTACATGACATCAGAGAGTTCTAGCTGTGTGCCTCCTCCTCAACCTAGTTGGGCTGTGGAGAGACTTCTCTATCTCTTTGGTGATGATTTGTTGCCTTGTTAG 531 0.4463 MGFYVEEPVSGLTIGQAIYEVALIIAILRWVLCLVFRVIKDRRTRSLHTPHEPSSPSSSSCMTRDKENTLLLTTFGEIVERLPQTEDTCAVCLNQLKMEDEVRELMNCYHVFHRECIDKWLEHDHENHKSTCPLCRAPLLSCCYMTSESSSCVPPPQPSWAVERLLYLFGDDLLPC* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2407 176 SUPERFAMILY RING/U-box 82 141 - -
Apr9g2407 176 Pfam Ring finger domain 87 136 IPR001841 -
Apr9g2407 176 SMART ringv_2 88 136 IPR011016 GO:0008270
Apr9g2407 176 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 175 - -
Apr9g2407 176 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 141 IPR013083 -
Apr9g2407 176 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 175 - -
Apr9g2407 176 ProSiteProfiles Zinc finger RING-type profile. 89 136 IPR001841 -
Apr9g2407 176 SMART ring_2 89 135 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2407 Apr-Chr9 31528391 31529086 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2407 1 173 C3H Transcription Factor Family AT5G20885 44.385 2.68e-42 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2407 K16281 - gmx:100306203 277.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2407 9 31528391 31529086 Apr9g2407 9 31528391 31529086 ECH