Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2406 ATGTCAACAGTAGAACCTCCTTCTTTCCAAGAAGCAGCGCGATGCGTTGTTTGCAATTGCAGTTTCAACACCTTCAGGAGAAGGCATCACTGTCGATCCTGTGGGAGAACATTGTGCAACGAGCATTCATCAAATCAAATGGCTCTACCGCAATTTGGCATTTACTCAAATGTCCGAGTATGTGCTGACTGTTTCAACAATTCCCGATCAGGGAAGGATGTACCACAGGCTTCTTCAGATGGAGCAAACAGCGTAACAGATACAATTTCTAAATTAGATATCGAGGAAAAGACTATACCAGCTGCAGAGAATAAGCTTGTACCAGGCGTTAAAGAGTGTAAATGTGGAATGCCTCTTTGCATATGTGAAGCTCCTGCCCCTTCCTCTGATGCACTTCCCCAGCAGAAGAAATCCACTCCAGTTATTACAGCTCCATCCAATCCCAAACCTAAGAAGACAGATACTGTTCCAAAAAATAGAAGCTCCGGTTCAACTAGCAAGTTTAGTTCTACATTTAACCTTGGTCATGGAACTAATGGTATCTTAGACAGACCCCAGATTGATTATGAAGCTAATGGAGAGGGTTTAAGAGAAGCAATAAAAAATGGTGACATTGCTGCTGTCAAGAAACTTCTTAGCAAGGGTGTTGATGCAAATTACAGGGACAAACAAGGACTGTCTTTATTACATTTGGCTGCAGTCTTCAATCAAACCGATATAGTTTTCATTCTCATGGATTCGGGGGCAAGCTTGGAGTACAAAAATGCTCAAGGAGAAACACCTTTAGATTGTGCTCCAGCAACATTGCAATACAAAATGCGAAAGAAGATGGAAGAAGGTGGAGCAATGAACCAAAACATATGA 864 0.419 MSTVEPPSFQEAARCVVCNCSFNTFRRRHHCRSCGRTLCNEHSSNQMALPQFGIYSNVRVCADCFNNSRSGKDVPQASSDGANSVTDTISKLDIEEKTIPAAENKLVPGVKECKCGMPLCICEAPAPSSDALPQQKKSTPVITAPSNPKPKKTDTVPKNRSSGSTSKFSSTFNLGHGTNGILDRPQIDYEANGEGLREAIKNGDIAAVKKLLSKGVDANYRDKQGLSLLHLAAVFNQTDIVFILMDSGASLEYKNAQGETPLDCAPATLQYKMRKKMEEGGAMNQNI* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2406 287 SMART ANK_2a 224 253 IPR002110 GO:0005515
Apr9g2406 287 SMART ANK_2a 257 287 IPR002110 GO:0005515
Apr9g2406 287 SMART ANK_2a 191 220 IPR002110 GO:0005515
Apr9g2406 287 ProSiteProfiles Ankyrin repeat profile. 191 223 IPR002110 GO:0005515
Apr9g2406 287 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 9 69 IPR017455 -
Apr9g2406 287 SUPERFAMILY FYVE/PHD zinc finger 11 74 IPR011011 -
Apr9g2406 287 SMART fyve_4 3 70 IPR000306 GO:0046872
Apr9g2406 287 Pfam FYVE zinc finger 10 67 IPR000306 GO:0046872
Apr9g2406 287 ProSiteProfiles Ankyrin repeat region circular profile. 224 255 - -
Apr9g2406 287 ProSiteProfiles Ankyrin repeat profile. 224 256 IPR002110 GO:0005515
Apr9g2406 287 MobiDBLite consensus disorder prediction 128 170 - -
Apr9g2406 287 CDD FYVE_scVPS27p_like 9 65 - -
Apr9g2406 287 SUPERFAMILY Ankyrin repeat 196 267 IPR036770 -
Apr9g2406 287 MobiDBLite consensus disorder prediction 131 170 - -
Apr9g2406 287 Pfam Ankyrin repeats (3 copies) 198 265 IPR002110 GO:0005515
Apr9g2406 287 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 70 IPR013083 -
Apr9g2406 287 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 27 3 280 - -
Apr9g2406 287 Gene3D - 185 286 IPR036770 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2406 203 282 MAP Kinase Kinase Kinase AT3G58760 36.250 2.39e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2406 - - gmx:100814367 508.449