Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2397 ATGTGCCATATGAGCAAGAGCGGTGGAAGCATGAAGGTGGTGTGGATGGTTGTGTTTATGGGGTTGGTGATTGTGAAATGGGTGGAAGGTTTCGACAATGCTAATGTCACAGACATGCAATATGTAAGTGGAAGAGGTTTCTACAGACCTTTGATGGTTGGTCTTACTCTTATTAATGCTGCTGCTGCTAAAGGAGCTGTTTGCCTGGATGGATCTTTACCAGGTTACCATTTCCACCGTGGATACGGTTCAGGATCAAACAGTTGGCTCATACAGTTGGAGGGAGGAGGCTGGTGTGGAACTGTCAGAAATTGTATATACAGTAAAAAAACACGTCATGGTTCATCATTATTTATGGAAAAACAAATACCATTTATTGGGATATTGAGCAACAAAGCTGAGGAAAATCCAGATTTTTTCAATTGGAATAGAATAAAAATCCGTTATTGTGACGGTGCATCATTTAGTGGCAACAGTCAAAATGCGGCAGCAGGGTTGTATTTCAGAGGGCAACGCATATGGCAAGCTGCCATGGAAGATTTAATGTCAAAAGGGATGCGCTATGCCAGACAGGCTCTTCTATCTGGATGTTCTGCTGGAGGTTTAGCTTCTATTATACATTGTGATGAATTTCGAGAATTGTTTCCTGGAACCACAAGAGTAAAGTGCTTAAGTGATGCTGGATTATTCCTTGATACTGTTGATGTATCTGGCCGTCGCAGTTTAAGGAATTTGTTTGGAAGTGTGGTTAGCTTACAGGGAGTGCAAAAGAGCCTTCCAAGGAGTTGTACCAGTCGCCTCAATCCAATTCTGATTCAAGCCAGTCTTGCTCCACCATCTGCTGACTATCGTTGGAACTGGATTGAATGCAGAAAAAATTATGCACGCTGCAGTGCACCGCAGATACAATATCTACAGGGTTTTCGAAATCAGATGCTTAGAGCTACAAGAGGCTTCTCAAGGTCTCGGAAAAACGGCTTATTCATAAATTCATGTTTTGCTCATTGCCAATCAGAGAGACAGGATACATGGTTTGCTCGTGATTCTCCTCATATTGGAAATAGAGGCATTGCAGAGTCTGTGGGGAACTGGTTTTTTGACCGAGTCAGTGTCCAAGCAATTGGTTGCCCTTACCCCTGTGACAAAACCTGCCATAATTTGGTTTTCAAGTGA 1173 0.4271 MCHMSKSGGSMKVVWMVVFMGLVIVKWVEGFDNANVTDMQYVSGRGFYRPLMVGLTLINAAAAKGAVCLDGSLPGYHFHRGYGSGSNSWLIQLEGGGWCGTVRNCIYSKKTRHGSSLFMEKQIPFIGILSNKAEENPDFFNWNRIKIRYCDGASFSGNSQNAAAGLYFRGQRIWQAAMEDLMSKGMRYARQALLSGCSAGGLASIIHCDEFRELFPGTTRVKCLSDAGLFLDTVDVSGRRSLRNLFGSVVSLQGVQKSLPRSCTSRLNPILIQASLAPPSADYRWNWIECRKNYARCSAPQIQYLQGFRNQMLRATRGFSRSRKNGLFINSCFAHCQSERQDTWFARDSPHIGNRGIAESVGNWFFDRVSVQAIGCPYPCDKTCHNLVFK* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2397 390 PANTHER NOTUM-RELATED 17 271 IPR004963 GO:0016787
Apr9g2397 390 PANTHER NOTUM-RELATED 272 389 IPR004963 GO:0016787
Apr9g2397 390 Pfam Pectinacetylesterase 51 268 IPR004963 GO:0016787
Apr9g2397 390 Pfam Pectinacetylesterase 272 369 IPR004963 GO:0016787
Apr9g2397 390 PANTHER PECTIN ACETYLESTERASE 17 271 - -
Apr9g2397 390 PANTHER PECTIN ACETYLESTERASE 272 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2397 Apr-Chr9 31476109 31482040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2397 2 390 Carbohydrate Esterase AT1G57590 58.473 2.30e-176 497
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2397 K19882 - gmx:100791571 736.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2397 9 31476109 31482040 Apr9g2397 9 31476109 31482040 ECH
Apr9g2397 9 31476109 31482040 Apr8g1298 8 19306227 19310966 ECH