Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2392 ATGGAAGGCAAAGTTGCATTGAAAAAATTGCTGCAAGTTCAGAAAAGGCTATGTGATAATAGTACAGATGCACTGAACGGGACTGAGGACCCATCCATTAAAAATACTTTAGGATCTAATTTTCTCAGTTTGAGCATGAGTAACACGGAGCCTTTCCAAAATCAGGAGCAGCAGACACAGAATCAATTGGGCTTGCTGCGAATTAAGCTAGAGGAGGTGGAGAAGGAGAATCAGAATTTAAAATCTATGCTAAATCAGATCACTGAACACTACGCAGTTCTTCAGAATCAGTTAGTGTTGGCGATGCAGAAGAAAAAACTATCTAATAATGAGGACATGCAGAAGGACAAGAAGCAAGATGAAATGGAGAAACCAGCGTTAGCCCCGGGGCAGTTCCTAAATACCGGTAGCATCAATAACCAAATAACATCACAAGAAGAAAAAATCGTAGTAGAACAAGCCTTTGAGACTTCTTGCAGGAAAACTAGAGTGTCCATAAGGGCACGATCAGATTTGCCTTCGATGAGTGATGGGTGTCAATGGAGAAAATATGGACAAAAGATAGCAAAGGGTAACCCTTGGCCCCGTGCCTACTATCGTTGCAACATGGGAACAGCATGCCCAGTTCGCAAGCAGGTTCAAAGGTGTGCTGTGGATGAGACTGTTCTCATTACAACCTATGAGGGGAATCATAATCATTCACTCCCACCAGAAGCAAGATCCATAGCAAGCACAACATCTGCAGCATTGGACATGTTCCTTTCTGGCTCTGCCACAAGTTCAAATGGCAGCACTCTATCAAATTCAGATCTTTTTTCTTCACTATCTAGTTCTACCTCCACTGGCTTGGCTACCTTCTATCCATCTGCATCATGTCCTACTGTAACATTGGACTTAACTGAACCCTCTAATAACAACTTGAAATTTCCAAGGGCTATTACTTCAAACCATTGGCAACCTTTTCCTCTCTCATATCGAGGATACGCTCAACAATCTGCGCTTCCAACCTCAGAGAAAAGCCTTAACTTGGTGGATGTTGTCAGTGCTGCTATAAGCAAGGATCCTTCTATTAAAGCAGCATTAGATGCAGCTATTTCCTCACTCACTGGAGGCACTCAGAACTCCAATAATTACTACCAACTTAGTAGGAGTGATCATGACCCCTCTTCTAAGGAGTCTGAAGTAATAAAGCATCAACCCTGCACTACAGATGAATTAATTTAG 1224 0.4232 MEGKVALKKLLQVQKRLCDNSTDALNGTEDPSIKNTLGSNFLSLSMSNTEPFQNQEQQTQNQLGLLRIKLEEVEKENQNLKSMLNQITEHYAVLQNQLVLAMQKKKLSNNEDMQKDKKQDEMEKPALAPGQFLNTGSINNQITSQEEKIVVEQAFETSCRKTRVSIRARSDLPSMSDGCQWRKYGQKIAKGNPWPRAYYRCNMGTACPVRKQVQRCAVDETVLITTYEGNHNHSLPPEARSIASTTSAALDMFLSGSATSSNGSTLSNSDLFSSLSSSTSTGLATFYPSASCPTVTLDLTEPSNNNLKFPRAITSNHWQPFPLSYRGYAQQSALPTSEKSLNLVDVVSAAISKDPSIKAALDAAISSLTGGTQNSNNYYQLSRSDHDPSSKESEVIKHQPCTTDELI* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2392 407 SMART WRKY_cls 175 235 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr9g2392 407 SUPERFAMILY WRKY DNA-binding domain 169 236 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr9g2392 407 MobiDBLite consensus disorder prediction 385 399 - -
Apr9g2392 407 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 382 IPR044810 GO:0003700
Apr9g2392 407 ProSiteProfiles WRKY domain profile. 170 236 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr9g2392 407 Coils Coil 56 97 - -
Apr9g2392 407 MobiDBLite consensus disorder prediction 375 407 - -
Apr9g2392 407 Gene3D WRKY domain 159 237 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr9g2392 407 Pfam WRKY DNA -binding domain 177 233 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr9g2392 407 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2392 Apr-Chr9 31432017 31436084 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2392 148 301 WRKY Transcription Factor Family AT4G04450 59.740 5.01e-61 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Apr9g2392 WRKY 4.5e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2392 - - aprc:113848172 766.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2392 9 31432017 31436084 Apr7g1454 7 21671827 21673957 PCT
Apr1g2473 1 34326006 34332452 Apr9g2392 9 31432017 31436084 PCT