Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2381 ATGGCAAGGCAGCCTGATTCTAAGAAGAACAAGGAAAAGAATGAAAGCATTAAGACAGTACCCTTCTACAAGCTTTTCTCATTTGCTGACTCTTGGGATCATCTTCTCATGTTTGTTGGGACAATAAGTGCTCTTGGGACTGGAATGTCAAAGATTTTAATGTATATAATTTTGGGAGATGCAATTGATGCTTTTAGAGGAGATGTTAACACTAAACAAATTGTTCATGAAATTTCCAAGGTGTCTTTGAAGTTTGCAGTCATAGGAGCAGGTGCCTTTCTTGCAGCTTTTCTGCAGGTGGCTTGTTGGGTGGCCACTGGGGAGAGACAAGCTTCAAGAATAAGAGGCTTATATCTCAAAGCAATTTTGAGGCAAGATATCAGCTTCTTTGACAAGGTAACAGATAGTGGTGAGGTTGTTGAAAGGATGTCAGGGGACACAGTTCTTATTCAAGAATCCATGGGAGAGAAGGTAGGAAAATGCATACAGCAAGTAGCATGTTTTTTAGGAGGTATAGTCATAGCATTTGAAAAGGGTTGGCTTCTAACCCTTGTACTTCTATCTTCTGTTCCGCCACTTGTCCTCACTGGTTCCATAACGAGCTTTGTTTTTACAAAGTTGGCATACCGTGCACAAGCAGCTTATTCTGAATCAGCAACTGTAGTGAAGCAGACAATTGGTTCAATTCGAACTGTTGCATCATTTACTGGTGAGAATCAAGCTATAGCTCAATACAATCAATCCTTGACCAAAGCTTACAGGACTGCATTGCAAGATGGAGTGGCTGCTGGTTTAGGCCTTGGTTTAATTCGGTTATTTGTTAACAGTAGTTATGCATTGGCTATGTGGTTTGGAGGGAAGATGGTACTTGAGAAAGGTTACACAGGAGGCCAAGTCATGGGTGTATTTTTTGCAGTATTCATTGGTTCCATGTCTTTGGGGCATGCATCTGGATGTTTAACCGCATTTGCTGCAGGACAGGCTGCAGCCTTTAAAATGTTTGAAACAATAGAGAGGCAACCAGATATTGATGCATATGAAACTGCTGGTCGACAACTAGATGATATTTCTGGAGATATAGAATTTAGAGAGGTTTTTTTCAGTTATCCTTCAAGACCAGAAGAATTGATATTGAATGGATTTTCTATTTCAATATCAAGTGGCACTACTGCAGCTTTGGTTGGGAAAAGTGGGAGTGGGAAATCTACAGTTATCAGCTTGATAGAGAGATTTTATGATACCCAAGCTGGTGAAGTTCTCATTGATGGTATCAACCTTATAGACTTCCAATTGAAATGGATCAGACAGAAAATAGGCCTTGTCAGCCAGGAACCAGTTCTCTTTAATTGCAGCGTTAAAGAAAATATTGCTTATGGTAAGGATGAGGCAACAGATGAAGAAATCAGAGCTGCATCTGAACTTGCTAATGCAGCTATATTCATAGATAAATTTCCACATGGACTTGACACGATTGTTGGGGAGCATGGTACTCAGCTTTCTGGGGGTCAAAAACAAAGAATTGCCATAGCAAGAGCAATTCTAAAAGATCCAAGAATTCTACTCCTTGATGAAGCTACAAGTGCACTTGATGCTGAGTCTGAGAGGGTGGTGCAAGAGACACTAGACAAAATTATGATAAACAGAACAACCGTCATTGTAGCTCACCGCCTAAACACAATCATGAATGCTGATATCATTGCCGTTATTCATCAAGGAAAAGTAGTAGAAAATGGTACACATTCTGAGCTCATTAAAGATCCTGATGGAGCTTATAGCCAGCTCATTAGATTGCAAGAAACTACCAAGGAGTCATATGGTACAAATGACACGGCAAGGCTAGAAAGCGCTGTAGATTCTGAACGCCAATCAAGCCAACAATTTTCTTTTCTTGAATCTTTAAGCCAGGTATCATCTGAAATCGGAAACAACAGTCATCACTCACGCAGAAAATCAAATGCTAGGCCTACTACAGTTGGACTTTTGAAAACATTTGAAGGAGGGTCTGAAGTTCTTCCTCCAGCAGTATCACAATCACCTCCTCCAAAAGTCTCATTCCTTCGCCTTGCTGGTCTTAACAAGCCTGAAATCCCAGTGTTAGTCCTAGGGACTCTAGCAGCTTCAGTCACTGGGGCAATACTACCCATTTTGGGTCTTCTTGTCTCTGGCATGATAAATACTCTCTTTGAGCCTGCAGATGAACTCCGTAAAGACTCAAAGTTTTGGGCATTAATATTTGTTGCCCTTAGTGCAGCTGGCTTCATATTTCATCCATTAAGGTCCTACTTTTTTGCTTTAGCTGGTTCAAAGTTGATAAGAAGGATCCGGCTAATGTGTTTTGAGAAAATAATTCACATGGAAGTAGGCTGGTTTGACAAAGCTGAGCATTCAAGTGGAGCACTTGGAGCAAGGCTGTCAACTGATGCATCTTCTATTAGGACTTTGGTCGGGGATGCACTTGGTTTGTTGGTTCAAGACATTGCCACAGCAATAACAGCCTTGGTAATTGCCTTTGAGGCAAACTGGCAGCTTTCTCTCGTAATTCTTGTTTTGCTACCTCTACTATTATTAAATGGATATGCGCAACTCAGGTCTATGAAAGGATTCAGCACAGATGCAAAGAAACTATATGAGGAAGCAAGTCAAATAGCAAATGACGCAGTAGAGAATATCAGAACAGTCGCAGCTTTCTGTGCTGAGGAAAAGGTGATAGAGCTATACCAGAAGAAATGTGTAGGACCAACCCAGGCAGGTATAAGGCAAGGGTTAGTCAGCGGAACAGATTTTGGGATATCGCTCTTTTTTGTGTTCTCTGTATATGCATGCAGTTTATATGCTGGAGCACGTCTAGTTGAGAATGGAAAAACATCAACCTCAGATGTTTTCCGTGTATTCTTTGCTCTCACAATGGCAGCTATAGCAATATCTCAATCTGCCTTCATGGGCCCAGGTGCGAGTAAAGCAAAAAGTTGTGTTAGTTCTATATTTGCTATTCTTCACCAGAAATCAAGAATAGACCCCAGTGACGAGTCCGGGGTCGTATTGCAAGATGCGAAGGGAGATATTGAGTTTCACCATGTCACTTTCAAGTATCCAACCAGGCCTAATGTTCATATATTCAAAGCTCTTTCCTTGACCATTCACGCAGGAGAGACAGTTGCTCTAGTAGGTGAAAGTGGAAGCGGAAAGTCAACAGTGATCTCATTGTTGCAAAGATTTTATGATCCAGATTCAGGTGAGATTACACTGGATGGAACAGAAATCCAAAAGCTACAACTTAAGTGGTTTAGGCAGCAAATGGGGCTTGTAAACCAAGAGCCTATGTTGTTTAATGACACCATCCGAGCCAATATTGCATATGGAAAAGGTGGAAATGCAACTGAGGCTGAAATTATAGCTGCAGCAGAATTGGCTAATGCTCACGGGTTTATTAGCAGTTTGCAGCAGGGTTACGATACAGTCGTAGGGGAGAGAGGGATTCAACTATCTGGAGGGCAGAAGCAGAGGGTGGCAATTGCAAGAGCCATAGTGAAGAGTCCAAAAATATTACTGCTAGATGAAGCCACAAGTGCACTTGATGCTGAGTCTGAAAGAGTGGTTCAGGATGCACTTGACCATGTGAGGGTGGACAGAACCACCATTGTGGTGGCACACAGGTTATCCACCATAAGAGATGCAGATTCAATTGCAGTGATTCAAAATGGAGTCATTGCAGAGAAAGGAAAGCATGACACTTTGCTAAATAAAGGGGGTACATATGCTTCCTTGGTAGCACTGCACACGACTGCTGCTTCATCTTAG 3798 0.4173 MARQPDSKKNKEKNESIKTVPFYKLFSFADSWDHLLMFVGTISALGTGMSKILMYIILGDAIDAFRGDVNTKQIVHEISKVSLKFAVIGAGAFLAAFLQVACWVATGERQASRIRGLYLKAILRQDISFFDKVTDSGEVVERMSGDTVLIQESMGEKVGKCIQQVACFLGGIVIAFEKGWLLTLVLLSSVPPLVLTGSITSFVFTKLAYRAQAAYSESATVVKQTIGSIRTVASFTGENQAIAQYNQSLTKAYRTALQDGVAAGLGLGLIRLFVNSSYALAMWFGGKMVLEKGYTGGQVMGVFFAVFIGSMSLGHASGCLTAFAAGQAAAFKMFETIERQPDIDAYETAGRQLDDISGDIEFREVFFSYPSRPEELILNGFSISISSGTTAALVGKSGSGKSTVISLIERFYDTQAGEVLIDGINLIDFQLKWIRQKIGLVSQEPVLFNCSVKENIAYGKDEATDEEIRAASELANAAIFIDKFPHGLDTIVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQETLDKIMINRTTVIVAHRLNTIMNADIIAVIHQGKVVENGTHSELIKDPDGAYSQLIRLQETTKESYGTNDTARLESAVDSERQSSQQFSFLESLSQVSSEIGNNSHHSRRKSNARPTTVGLLKTFEGGSEVLPPAVSQSPPPKVSFLRLAGLNKPEIPVLVLGTLAASVTGAILPILGLLVSGMINTLFEPADELRKDSKFWALIFVALSAAGFIFHPLRSYFFALAGSKLIRRIRLMCFEKIIHMEVGWFDKAEHSSGALGARLSTDASSIRTLVGDALGLLVQDIATAITALVIAFEANWQLSLVILVLLPLLLLNGYAQLRSMKGFSTDAKKLYEEASQIANDAVENIRTVAAFCAEEKVIELYQKKCVGPTQAGIRQGLVSGTDFGISLFFVFSVYACSLYAGARLVENGKTSTSDVFRVFFALTMAAIAISQSAFMGPGASKAKSCVSSIFAILHQKSRIDPSDESGVVLQDAKGDIEFHHVTFKYPTRPNVHIFKALSLTIHAGETVALVGESGSGKSTVISLLQRFYDPDSGEITLDGTEIQKLQLKWFRQQMGLVNQEPMLFNDTIRANIAYGKGGNATEAEIIAAAELANAHGFISSLQQGYDTVVGERGIQLSGGQKQRVAIARAIVKSPKILLLDEATSALDAESERVVQDALDHVRVDRTTIVVAHRLSTIRDADSIAVIQNGVIAEKGKHDTLLNKGGTYASLVALHTTAASS* 1266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2381 1265 CDD ABC_6TM_Pgp_ABCB1_D1_like 37 321 - -
Apr9g2381 1265 SUPERFAMILY ABC transporter transmembrane region 681 1001 IPR036640 GO:0005524|GO:0016021
Apr9g2381 1265 CDD ABC_6TM_Pgp_ABCB1_D2_like 691 1004 - -
Apr9g2381 1265 ProSitePatterns ABC transporters family signature. 1161 1175 IPR017871 GO:0005524
Apr9g2381 1265 SUPERFAMILY ABC transporter transmembrane region 18 342 IPR036640 GO:0005524|GO:0016021
Apr9g2381 1265 SMART AAA_5 387 579 IPR003593 -
Apr9g2381 1265 SMART AAA_5 1048 1241 IPR003593 -
Apr9g2381 1265 PANTHER - 10 1261 - -
Apr9g2381 1265 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1021 1258 IPR003439 GO:0005524
Apr9g2381 1265 Gene3D - 358 622 IPR027417 -
Apr9g2381 1265 Gene3D - 1012 1264 IPR027417 -
Apr9g2381 1265 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 360 596 IPR003439 GO:0005524
Apr9g2381 1265 ProSitePatterns ABC transporters family signature. 499 513 IPR017871 GO:0005524
Apr9g2381 1265 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 10 1261 - -
Apr9g2381 1265 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 598 IPR027417 -
Apr9g2381 1265 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 700 986 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr9g2381 1265 CDD ABC_MTABC3_MDL1_MDL2 1021 1256 - -
Apr9g2381 1265 Pfam ABC transporter 1040 1189 IPR003439 GO:0005524
Apr9g2381 1265 Pfam ABC transporter 378 527 IPR003439 GO:0005524
Apr9g2381 1265 Pfam ABC transporter transmembrane region 700 971 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr9g2381 1265 Pfam ABC transporter transmembrane region 37 311 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr9g2381 1265 Gene3D ABC transporter type 1, transmembrane domain 84 995 IPR036640 GO:0005524|GO:0016021
Apr9g2381 1265 CDD ABC_MTABC3_MDL1_MDL2 360 598 - -
Apr9g2381 1265 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1010 1258 IPR027417 -
Apr9g2381 1265 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 38 325 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2381 Apr-Chr9 31375484 31381349 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2381 22 601 Calmodulin-binding Proteins AT2G36910 35.726 1.10e-103 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2381 K05658 - gmx:100798707 1925.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2381 9 31375484 31381349 Apr9g2381 9 31375484 31381349 ECH