Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2380 ATGGCTGGAAGGCAAAAGGATTCCAAGAACAACAAGGTGAAGGATGAAGGAAACAAAACAGTACCCTATTACAAGCTTTTCTCCTTTGCAGACTCTTGGGATCATCTACTGATGTTTCTTGGAGCAATTAGCGCTGTTGGGAACGGAATAAGCATGCCTCTAATGAGTATAATCATTGGAGATGCAATTGATGCTTTTGGAGGAAATGTTGACAATAAACAAGTAGTTCATGAAGTTTCCAAGGTATCTCTGAAGTTTGCATGCATAGGTGCGGGTGCCTTTCTTGCAGCATTTTTGCAGTTGGCTTGCTGGGTGATCACTGGGGAGAGACAAGCTGCAAGAATACGAGGCTTATATCTTAAAGCAATTTTGAGGCAAGATATCAGTTTCTTTGACAAGGAAACGAACAGTGGTGAGGTTGTTGGAAGGATGTCAGGTGACACAGTTCTTATTCAAGAAGCCATGGGGGAGAAGGTAGGAAAATTCATACAGTATTTGGCATGTTTCTTAGGATCTATAGTCATAGCATTCATCAAGGGTTGGCTTCTTACCCTTGTTCTTCTATCTTCTGTTCCGCTTCTTGTCCTTTCTGGTTCTGTAATGAGCTTTGCTTTTGCAAAGATGGCATCCCGTGGACAAGCAGCTTATTCTGAAGCAGCAACAGTAGTGGAGAGGACAATTGGTTCAATTCGAACTGTTGCATCATTTACGGGCGAGAAGCAAGCTATAGCTCAATATAATCAATACTTAACTAAAGCTTACAGAACTGGAGTGCAAGAGGGTGTGGCTGGTGGTTTAGGCTTCGGTACAGTTCGTTTACTTGTTTACTGCAGTTATGGCTTGGCTGTATGGTTTGGAGGGAAGATGGTAGTAGAAAAAGGTTATACAGGAGGACAAGTCATAAGTGTATTTTTTGCATTATTGAGTGGTTCCATTTCTCTGGGGCAGGCATCTCCAAGCTTAACTGCATTTGCTGCAGGACAAGCTGCAGCCTTTAAAATGTTTGAAACGATACAGAGACAGCCAGATATTGATGCTTATAACACTGCAGGACAACAGCTACATGATATTTCTGGAAATATAGAACTTAGGGAGGTTTGCTTTAGTTATCCTTCAAGACCTGATGAACAGATATTTAATGGATTTTCAATTTCAATATCAAGTGGCACTACTGCAGCTTTGGTAGGTCAAAGTGGGAGTGGGAAATCAACAGTTATTAGTTTAATCGAGAGATTTTATGATCCACAAGCTGGTGAAGTTCTCATTGATGGTATCAACCTCAGAGAATTTCAATTGAAATGGATCAGACAGAAAATAGGCCTGGTCAGCCAGGAACCAGTTCTCTTTACTTGTAGCATTAAAGAGAATATCGCCTATGGCAAGGATGGTGCAACTGATGAAGAAATCAGCACTGCAGCTGAACTTGCTAATGCTGCTAAATTCATAGATAAATTTCCCCATGGACTTGACACGATGGTTGGCGAACATGGAACTCAGCTCTCTGGAGGTCAAAAGCAAAGAATAGCTATAGCAAGAGCAATTCTGAAGGACCCAAGAATTCTCCTCCTTGATGAAGCTACAAGTGCTCTTGATGCAGAATCAGAGAAAGTGGTGCAAGAGACATTAGACAGGGTTATGATAAACCGAACAACTGTCATTGTAGCCCACCGCCTAAGCACAATAAGGAATGCTGATATTATTGCAGTTATTCATCAAGGAAAAGTAGTAGAAAAAGGTACACATGCTGACCTCACCAAAGAACCTGATGGAGCTTTTAGCCAGCTCATTAAATTGCAAGAAATTAGAAGGGAATCAGACCAGCAAGTTGCAAAGGACTCAGGCAGGCCAGAAAGTTTTGTAGATTCTGAACAACAATCAAGCCAACGGTTTTCTTTCCCTCAATCCTTAAGCCGGGGATCATCTGGAGCAGGAAACAGCAGTCGTCACTCATTCAGAATGTCAAGTACTATGCCTGCCCCTCAAGGTCTCTTGGAAACGTCAGAAGGAGGACATGAAGTCCTTCCTTCAGCAGCATTACATAAACCTCAAGAAGTTTCATTTCTCCGCCTTGCGCGTCTTAACAAGCCTGAAATCCCAGTGTTAATCTTAGGGACTCTAGCAGCAGCAGTAACTGGGGCAACACTACCTACTGTGGGGCTCCTTCTCTCCAATATGATACATACTTTCTTTGAGCCTGCAGATGAAATCCGTAAAGACTCAAAGTTCTGGGCATTAATATTTGTTGCCCTTGGTGTGGGTTCCTTCATATTTCAACCATTGAGGTCTTACTTTTTTGCTGTTGCTGGTTCTAAGTTGATAAAAAGGATCCGGCTAATGTGTTTTGAGAAAATCATTCACATGGAAATAGGATGGTTTGATAAAGCTGAGCATTCAAGTGGAGCACTTGGCGCAAGGCTGTCAATTGACGCGGCTTCTATTCGAACTTTGGTTGGGGATGCACTTGGTCTGATGGTTCAAGACATTGCTACAGCAATTACAGCCTTGGCAATTGCCTTTGAGGCAAACTGGCAGCTTTCTCTCATTGTTCTAGTGTTGGTACCTTTGGTTTTAGTAAATGGACATGTGCAAATGAGATCCATGCAAGGATTTAGCGCAGATGCAAAGAAACTATATGAGGAAGCAAGCCATGTAGCAAATGATGCAGTAGGGAATATCCGAACAGTTGCTGCTTTCTGTGCTGAAGAGAAGGTGATGGAATTATATCAGAAGAAATGTGTAGGACCAATCCAGACAGGTATAAGGCAAGGTTTAGTCAGCGGAATTGGTTTTGGGTTATCAATCTTCTTCCTGTTCTCTGTCTATGCATGCAGTTTTTATGCTGGAGCCCGACTTGTTGAGAAAGGCAAAATGTCTATTTCGGAGGTTTTCCGTGTATTTTTTACTCTCACAATGGCAGCTGTAGCAATGTCACAATCTGGCTTCATGTCCCCAGCTGCAAGTAGAGCAAAAAGTTCTGCCACTTCTATATTTGAAATTCTTGATAAAAAATCGAAAATAGACCCCAGTGATGAGTCTGGAATGACATTACAAGATGTGAAAGGGAATATTGAGTTCCACCATGTCACTTTCAAGTATCCAACCAGGCCCAATGTTCATATATTCAAAGATCTTTCCTTGACCATTCACGCAGGAGAGACAGTTGCTCTAGTTGGAGAAAGTGGAAGCGGAAAGTCAACAGTGATCTCATTGTTGCAAAGATTTTATGATCCAGATTCAGGTGAGATCACACTGGATGGAACAGAAATCCAAAAGCTACAACTCAAGTGGTTTAGGCAGCAAATGGGGCTTGTAAGCCAAGAGCCTATGTTGTTTAATGACACCATCCGAGCCAATATTGCATATGGAAAAGGTGGAAATGCAACTGAGGCTGAAATTATAGCTGCAGCAGAGTTGGCTAATGCTCACAAGTTTATTAGCAGTTTGCAGCAGGGTTACGATACAGTCGTAGGGGAGAGAGGGACTCAACTATCTGGAGGGCAGAAGCAGAGGGTGGCAATTGCAAGAGCCATTGTGAAGAGTCCGAAAATATTACTGCTAGATGAAGCCACAAGTGCACTTGATGCTGAGTCTGAAAGAGTGGTTCAGGATGCACTTGACCATGTGAGGGTGGACAGAACCACCATTGTGGTGGCACACAGGTTATCCACCATAAGAGATGCAGATTCAATTGCAGTGATTCAAAATGGAGTCATTGCAGAGAAAGGAAAGCATGACACTTTGCTCAATAAAGGGGGTGCATATGCGTCCTTGGTAGCACTACACATGACTGCTTCTTCATCTTAG 3804 0.4253 MAGRQKDSKNNKVKDEGNKTVPYYKLFSFADSWDHLLMFLGAISAVGNGISMPLMSIIIGDAIDAFGGNVDNKQVVHEVSKVSLKFACIGAGAFLAAFLQLACWVITGERQAARIRGLYLKAILRQDISFFDKETNSGEVVGRMSGDTVLIQEAMGEKVGKFIQYLACFLGSIVIAFIKGWLLTLVLLSSVPLLVLSGSVMSFAFAKMASRGQAAYSEAATVVERTIGSIRTVASFTGEKQAIAQYNQYLTKAYRTGVQEGVAGGLGFGTVRLLVYCSYGLAVWFGGKMVVEKGYTGGQVISVFFALLSGSISLGQASPSLTAFAAGQAAAFKMFETIQRQPDIDAYNTAGQQLHDISGNIELREVCFSYPSRPDEQIFNGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLREFQLKWIRQKIGLVSQEPVLFTCSIKENIAYGKDGATDEEISTAAELANAAKFIDKFPHGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQETLDRVMINRTTVIVAHRLSTIRNADIIAVIHQGKVVEKGTHADLTKEPDGAFSQLIKLQEIRRESDQQVAKDSGRPESFVDSEQQSSQRFSFPQSLSRGSSGAGNSSRHSFRMSSTMPAPQGLLETSEGGHEVLPSAALHKPQEVSFLRLARLNKPEIPVLILGTLAAAVTGATLPTVGLLLSNMIHTFFEPADEIRKDSKFWALIFVALGVGSFIFQPLRSYFFAVAGSKLIKRIRLMCFEKIIHMEIGWFDKAEHSSGALGARLSIDAASIRTLVGDALGLMVQDIATAITALAIAFEANWQLSLIVLVLVPLVLVNGHVQMRSMQGFSADAKKLYEEASHVANDAVGNIRTVAAFCAEEKVMELYQKKCVGPIQTGIRQGLVSGIGFGLSIFFLFSVYACSFYAGARLVEKGKMSISEVFRVFFTLTMAAVAMSQSGFMSPAASRAKSSATSIFEILDKKSKIDPSDESGMTLQDVKGNIEFHHVTFKYPTRPNVHIFKDLSLTIHAGETVALVGESGSGKSTVISLLQRFYDPDSGEITLDGTEIQKLQLKWFRQQMGLVSQEPMLFNDTIRANIAYGKGGNATEAEIIAAAELANAHKFISSLQQGYDTVVGERGTQLSGGQKQRVAIARAIVKSPKILLLDEATSALDAESERVVQDALDHVRVDRTTIVVAHRLSTIRDADSIAVIQNGVIAEKGKHDTLLNKGGAYASLVALHMTASSS* 1268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2380 1267 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1012 1261 IPR027417 -
Apr9g2380 1267 CDD ABC_MTABC3_MDL1_MDL2 1023 1258 - -
Apr9g2380 1267 CDD ABC_MTABC3_MDL1_MDL2 361 599 - -
Apr9g2380 1267 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 7 1263 - -
Apr9g2380 1267 MobiDBLite consensus disorder prediction 619 662 - -
Apr9g2380 1267 Pfam ABC transporter 1042 1191 IPR003439 GO:0005524
Apr9g2380 1267 Pfam ABC transporter 380 528 IPR003439 GO:0005524
Apr9g2380 1267 SMART AAA_5 1050 1243 IPR003593 -
Apr9g2380 1267 SMART AAA_5 388 580 IPR003593 -
Apr9g2380 1267 CDD ABC_6TM_Pgp_ABCB1_D1_like 38 322 - -
Apr9g2380 1267 Gene3D - 359 612 IPR027417 -
Apr9g2380 1267 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 39 326 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr9g2380 1267 Gene3D - 1013 1266 IPR027417 -
Apr9g2380 1267 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1023 1260 IPR003439 GO:0005524
Apr9g2380 1267 PANTHER - 7 1263 - -
Apr9g2380 1267 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 702 988 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr9g2380 1267 ProSitePatterns ABC transporters family signature. 500 514 IPR017871 GO:0005524
Apr9g2380 1267 Gene3D ABC transporter type 1, transmembrane domain 85 933 IPR036640 GO:0005524|GO:0016021
Apr9g2380 1267 MobiDBLite consensus disorder prediction 603 667 - -
Apr9g2380 1267 Pfam ABC transporter transmembrane region 38 311 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr9g2380 1267 Pfam ABC transporter transmembrane region 701 973 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr9g2380 1267 SUPERFAMILY ABC transporter transmembrane region 689 1007 IPR036640 GO:0005524|GO:0016021
Apr9g2380 1267 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 599 IPR027417 -
Apr9g2380 1267 ProSitePatterns ABC transporters family signature. 1163 1177 IPR017871 GO:0005524
Apr9g2380 1267 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 361 597 IPR003439 GO:0005524
Apr9g2380 1267 CDD ABC_6TM_Pgp_ABCB1_D2_like 691 1006 - -
Apr9g2380 1267 SUPERFAMILY ABC transporter transmembrane region 25 343 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2380 Apr-Chr9 31365852 31372285 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2380 19 1261 Calmodulin-binding Proteins AT2G36910 43.725 0.0 1031