Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2378 ATGGCAGGGGATATAAGTTTGAATGGAGATCCTGATAGCATGCAAGATTCAAAGAAGAGTGAGGCCAAAGAAGCCGCCGCCAAAACAGTACCCTTATACAAGCTTTTCTCATTTGCTGATCCTTTAGATCATTTGTTGATGTTTGTGGGGACTGTGGGGGCTATCGGGAATGGAATCTCCATGCCCTTAATGACTTTGATATTTGGAAATATGATCAATGCATTTGGAGGATCCACAAGCACCAAAGAAGTTGTGGATGAAGTCTCCAAGGTGTCTCTGAATTTTGTGTACTTGGCTGCGGGTACCTTTGTTGCATCACTTCTGCAGATGACTTGTTGGATGATCACTGGGGAAAGACAGGCTGCAAAAATTAGAGGGTTATACCTTCAAACAATTTTGAGGCAAGATGTCAGCTTCTTTGATAAAGAGACTAATACAGGAGAGGTTGTTGGAAGGATGTCAGGTGACACTGTTCTTATTCAAGATGCCATGGGTGAGAAGGTGGGACAGTTCATACAGCTAATGGCATCTTTCTTTGGAGGCTTTATCATAGCATTCATTAGGGGATGGCTTCTAACTGTTGTGATGCTATCTTGTCTTCCACTTCTTGTTTTGTCTGGGGCTATGATGAGCCTGATTATTACAAAAGCATCATCAAGGGGACAAGCTGCATATTCTACAGCTGCAAGTGTAGTAGAGCAGACACTTGGTTCGATCCGAACTGTTGCATCATTCACTGGAGAGAAGCAAGCAATAGCTAAATATGATCACTCTTTAATCAAGGCTTACAAGACTGGAGTGGAAGAGGCACTAGCTTCTGGTTTGGGATTTGGTGCACTCTATTTTGTTATTATCTGCAGTTATGGTTTAGCTGTATGGTATGGTGCAAAAATGATAATAGAGAAAGGATATACGGGAGGAGAGGTTGTGACAATAATTTTTGCTGTATTGACTGGCTCCATGTCTCTTGGGCAGGCATCTCCAAGCTTGAGTGCTTTTGCTGCAGGACAAGCTGCAGCCTTTAAAATGTTTGAAACTATTGAAAGGAAGCCAGAGATTGATGTTTATGACACTACCGGCCGGAAGCTTGATGACATTCGTGGAGATATAGAACTCAAGGAGGTTTGCTTTAGTTATCCTACAAGACCAGATGAGTTGATATTCAATGGATTTTCTCTTTCAATACCAAGTGGCACCACTGTAGCTTTGGTAGGACAAAGTGGGAGTGGGAAATCAACAGTTGTTAGTTTGATAGAGAGATTTTATGATCCACAGTCAGGTGAAGTTCTCATTGACGGTATCAACCTCAAAGAATTTCAACTGAAATGGATTAGACAGAAAATAGGCCTAGTTAGTCAGGAACCAGTTCTCTTTACTTGTAGCATTAAAGAGAATATCGCCTATGGCAAGGATGGTGCAACTGATGAAGAAATCAGAGCTGCAGCAGAATTAGCTAATGCTGCCAAATTTATAGATAAACTACCTCAGGGACTAGACACAATGGTTGGTGAGCATGGAACTCAACTCTCTGGGGGTCAAAAACAAAGAGTTGCAATAGCAAGAGCAATTTTGAAAGACCCAAGAATCCTACTTCTGGATGAAGCTTCAAGTGCCCTTGATGCTGAATCTGAGAGAATTGTGCAAGAGGCTTTGGATAGAATAATGATAAACCGAACAACCGTCATTGTAGCCCACCGCTTAAGTACTATACGGAATGCTGATACCATTGCTGTTATTCATCAGGGAAAAATAATTGAAAGAGGGTCATATGATGATCTCACCAAGAATCCTGAAGGAGCCTATAGCCAGCTCATCAGACTACAAGAAATTAAAGGGTCAGAACAGAATGTAGTTGACGGAGACAAGCCAGAGAGTAGCACAGCGCATTCGGGAAGACTATCAAGTCAAAGATCTTCTTTCTTACGATCTATAAGCCAAGAATCATTGGGAGTTGGAAACAGTGGTCGCCATTCATTATCAGCATCATTTGGTGTGCCAACAAGTGTTGGCTTCATAGAACCTGCAAGTGCAGAACCTCAAGATCCTTCTTCAACTGCTCCTTCACCACCAGAAGTGCCACTTTATCGCTTGGCTTATTTAAATAAGCCAGAGACTCCAGTGTTACTCCTGGGGACTATAGCTGCAGTGGTAAATGGAGTAATATTACCTGTTTTTGGGCTCTTGCTTTCCAAAATGATAAGTATTTTCTATGAGCCAGCTCACGAACTTCGCAAAGATTCAAAAGTTTGGGCATTGGTATTTGTTGCGCTTGGTGTAGTATCATTTCTGGTTTTTCCAAGCAGATTCTACCTTTTTGGTGTTGCTGGTGGTAAGTTGATCAAAAGGATCCGGAAAATGTGCTTTGAGAAAGTGATTCACATGGAAGTAAGTTGGTTTGATGAATCTGGGAATTCAAGTGGAGCAATTGGAGCAAGGCTTTCTACTGATGCAGCTTCTGTTCGCACTTTGGTTGGGGATGCACTTGGTTTGCTTGTTCAAAATATTGCTACAGCAATAGCTGGCTTGGTAATTGCTTTTGAATCAAGCTGGCAGCTGGCTCTTATAATCCTTGCTTTGGTGCCTCTGCTAGGATTAAATGGATATGTGCAACTCAAGTTCTTGAAAGGATTCAGTGCAGATGCAAAGAAACTGTATGAAGAAGCAAGTCAAGTGGCAAATGATGCTGTAGGGAGTATTAGAACAGTTGCCTCTTTCTGTGCTGAAGAGAAGGTGATGGAATTATACCAGGAAAAATGTGAAGGACCAATTAAGACAGGCATAAGGCGGGGGATAATTAGTGGAATTGGTTTTGGATCATCATTCTTTGTGCTGTATGCAGTTTATGCATGCAGCTTTTACGCTGGAGCTCGACTTGTAGAGGATGGAAAATCAACATTCTCAGATGTTTTCCGCGTCTTTTTTGCTCTCAGTATGGCAGCTATAGGAATCTCTCAATCTGGCTCTTTGGTGCCTGATTCAACTAAAGCAAAAGGTGCAGCTGCTTCCATATTTGCTATTCTTGACCGAAAATCACACATAGACCCAAGTGATGATTCTGGAATGACATGGGAAGAAGTGAAGGGAGAGATTGAACTTAAACATGTCAGTTTCAAGTATCCTACCAGACCCGATGTTCAAATATTCAGAGATCTTAGCTTAACCATTCGTAGTGGCAAGACAGTTGCACTGGTTGGAGAAAGTGGAAGTGGAAAATCAACAGTGATCTCATTATTACAAAGATTTTATGATCCAGACTCAGGTCAAATTACACTAGATGGTAAAGAAATCCAAAGGATCCAACTTAAATGGCTAAGGCAACAAATGGGTCTGGTAAGTCAAGAGCCTGTACTGTTTAATAACACAATAAGGGCCAATATTGCATATGGAAAGGGTGGAGATGCAACAGAGGCAGAAATTATAGCTGCAGCAGAACTGGCAAATGCACACAAGTTCATTAGTAGTTTGCAGAAGGGTTATGACACGTTAGTAGGGGAGAGAGGAGTTCAATTATCTGGGGGGCAGAAGCAAAGGGTGGCAATTGCAAGAGCCATAGTGAAGAATCCAAAGATATTGCTACTAGATGAAGCAACAAGTGCACTTGATGCTGAGTCCGAAAAAGTGGTTCAAGATGCACTAGACCGTGTTATGGTGGACCGAACCACAATAGTAGTGGCCCATAGATTATCCACAATTAAGGGTGCAGATTTAATTGCTGTAGTTAAAAATGGTGTTATAGCCGAGCAAGGAAAGCATCAAGCTTTACTTAAAAAAGGAGGTAACTATGCTTCATTAGTGGCGTTGCACACAAGTGCCTCTTCATCTTAG 3825 0.4178 MAGDISLNGDPDSMQDSKKSEAKEAAAKTVPLYKLFSFADPLDHLLMFVGTVGAIGNGISMPLMTLIFGNMINAFGGSTSTKEVVDEVSKVSLNFVYLAAGTFVASLLQMTCWMITGERQAAKIRGLYLQTILRQDVSFFDKETNTGEVVGRMSGDTVLIQDAMGEKVGQFIQLMASFFGGFIIAFIRGWLLTVVMLSCLPLLVLSGAMMSLIITKASSRGQAAYSTAASVVEQTLGSIRTVASFTGEKQAIAKYDHSLIKAYKTGVEEALASGLGFGALYFVIICSYGLAVWYGAKMIIEKGYTGGEVVTIIFAVLTGSMSLGQASPSLSAFAAGQAAAFKMFETIERKPEIDVYDTTGRKLDDIRGDIELKEVCFSYPTRPDELIFNGFSLSIPSGTTVALVGQSGSGKSTVVSLIERFYDPQSGEVLIDGINLKEFQLKWIRQKIGLVSQEPVLFTCSIKENIAYGKDGATDEEIRAAAELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRVAIARAILKDPRILLLDEASSALDAESERIVQEALDRIMINRTTVIVAHRLSTIRNADTIAVIHQGKIIERGSYDDLTKNPEGAYSQLIRLQEIKGSEQNVVDGDKPESSTAHSGRLSSQRSSFLRSISQESLGVGNSGRHSLSASFGVPTSVGFIEPASAEPQDPSSTAPSPPEVPLYRLAYLNKPETPVLLLGTIAAVVNGVILPVFGLLLSKMISIFYEPAHELRKDSKVWALVFVALGVVSFLVFPSRFYLFGVAGGKLIKRIRKMCFEKVIHMEVSWFDESGNSSGAIGARLSTDAASVRTLVGDALGLLVQNIATAIAGLVIAFESSWQLALIILALVPLLGLNGYVQLKFLKGFSADAKKLYEEASQVANDAVGSIRTVASFCAEEKVMELYQEKCEGPIKTGIRRGIISGIGFGSSFFVLYAVYACSFYAGARLVEDGKSTFSDVFRVFFALSMAAIGISQSGSLVPDSTKAKGAAASIFAILDRKSHIDPSDDSGMTWEEVKGEIELKHVSFKYPTRPDVQIFRDLSLTIRSGKTVALVGESGSGKSTVISLLQRFYDPDSGQITLDGKEIQRIQLKWLRQQMGLVSQEPVLFNNTIRANIAYGKGGDATEAEIIAAAELANAHKFISSLQKGYDTLVGERGVQLSGGQKQRVAIARAIVKNPKILLLDEATSALDAESEKVVQDALDRVMVDRTTIVVAHRLSTIKGADLIAVVKNGVIAEQGKHQALLKKGGNYASLVALHTSASSS* 1275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2378 1274 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 48 335 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr9g2378 1274 Gene3D - 1020 1273 IPR027417 -
Apr9g2378 1274 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 709 995 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr9g2378 1274 ProSitePatterns ABC transporters family signature. 1170 1184 IPR017871 GO:0005524
Apr9g2378 1274 SUPERFAMILY ABC transporter transmembrane region 34 354 IPR036640 GO:0005524|GO:0016021
Apr9g2378 1274 CDD ABC_6TM_Pgp_ABCB1_D1_like 47 331 - -
Apr9g2378 1274 Gene3D ABC transporter type 1, transmembrane domain 94 996 IPR036640 GO:0005524|GO:0016021
Apr9g2378 1274 MobiDBLite consensus disorder prediction 1 21 - -
Apr9g2378 1274 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 362 608 IPR027417 -
Apr9g2378 1274 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 15 1270 - -
Apr9g2378 1274 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1019 1267 IPR027417 -
Apr9g2378 1274 MobiDBLite consensus disorder prediction 619 638 - -
Apr9g2378 1274 CDD ABC_6TM_Pgp_ABCB1_D2_like 698 1013 - -
Apr9g2378 1274 SUPERFAMILY ABC transporter transmembrane region 696 1014 IPR036640 GO:0005524|GO:0016021
Apr9g2378 1274 MobiDBLite consensus disorder prediction 612 638 - -
Apr9g2378 1274 ProSitePatterns ABC transporters family signature. 509 523 IPR017871 GO:0005524
Apr9g2378 1274 CDD ABC_MTABC3_MDL1_MDL2 1030 1265 - -
Apr9g2378 1274 PANTHER - 15 1270 - -
Apr9g2378 1274 CDD ABC_MTABC3_MDL1_MDL2 370 608 - -
Apr9g2378 1274 Gene3D - 368 632 IPR027417 -
Apr9g2378 1274 Pfam ABC transporter 389 536 IPR003439 GO:0005524
Apr9g2378 1274 Pfam ABC transporter 1049 1198 IPR003439 GO:0005524
Apr9g2378 1274 Pfam ABC transporter transmembrane region 708 978 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr9g2378 1274 Pfam ABC transporter transmembrane region 47 321 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr9g2378 1274 SMART AAA_5 1057 1250 IPR003593 -
Apr9g2378 1274 SMART AAA_5 397 583 IPR003593 -
Apr9g2378 1274 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 370 606 IPR003439 GO:0005524
Apr9g2378 1274 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1030 1267 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2378 Apr-Chr9 31348091 31354328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2378 21 1268 Calmodulin-binding Proteins AT2G36910 46.411 0.0 1099
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2378 K05658 - gmx:100800293 2120.51