Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2368 ATGGCGTCTGATCTGAGTTCAGGGTTGTCTAAGAAAACATCTGTTTTTGGGTTGCAAGCATGGGAATTAATGGGGATAATAGTTGGCTTGTTCATTATAATCATTCTTGTGGTGCTATCAATATGTCTTACTTCGAGGAAGAAATCAAGAAGAGTAAATGGCATGCTTCCCCTTAGCCGTATGTTATCCGTTTCAGACGAGATCAAGGAGATTAGAGTTGATCAAGTTTCAGCAAATAATCATCCTCAGAATGGCGCTTTTATGAGTCTGTATGACAGGTTTAGTGACAGGGAGTCTGAAAAGGTTTTGATCCAAGCAAAGAATGGAGAAAATAGCAGTCAATCAGGCTCATTTGTTCATCTTAAGAAAGATGATGGTGGCTCTCAATCCGGTGAAGAAAGTGGTGCTAAGTCTGTTTCTACTTATTGGTCGTCTTCACATCCTATAACTGCTCCATCCCCCTTGTCTGGTCTGCCTGAATTCTCTCACCTTGGCTGGGGACACTGGTTTACATTAAGGGACCTAGAACTTGCAACAAACAGGTTTTCGAAAGACAATGTTATTGGTGAAGGAGGATATGGAGTTGTTTATCAAGGCCATCTAATCAATGGGAGTCCTGTGGCTGTTAAGAAGCTACTCAATAATCTTGGACAAGCTGAAAAGGAATTTAGGGTGGAAGTTGAGGCTATTGGTCATGTGCGGCACAAAAATTTGGTTCGACTTTTGGGCTATTGCATTGAAGGCACTCACAGGTTGTTGGTTTACGAATATGTTAACAATGGCAATTTAGAGCAATGGCTTCATGGAGCAATGCGGCAGTATGGTTTTCTTACATGGGATGCTCGGATTAAAATTCTTCTTGGAACAGCTAAAGCGCTGGCTTACTTGCATGAGGCAATTGAGCCAAAAGTTGTACATCGAGATATTAAATCCAGCAATATTCTAATTGATGACGATTTCAATGCCAAAATATCTGATTTTGGGTTGGCTAAGTTACTGGGTGCTGGAAAAAGTCATATTACAACTCGAGTTATGGGTACTTTTGGATATGTGGCTCCAGAGTATGCCAATTCTGGCTTACTAAATGAGAAGAGTGATGTTTATAGCTTTGGGGTATTGCTCCTGGAAGCAATTACTGGAAGAGACCCAGTGGATTATAGCCGACCAGCAGCTGAGGTAAATTTGGTTGATTGGCTCAAGATGATGGTAGGGAATAGGCGTGCAGAAGAGGTGGTGGATCCTAACATTGAGACCAGGCCATCAACAAGTGCCCTTAAACGAGCCCTTTTGACTGCTTTGAGGTGTGTTGATCCAGATGCTGAGAAAAGACCAAAGATGAGTCAAGTTGTTCGCATGCTCGAATCGGAGGAATATCCCATACCCCGAGAGGATCGAAGACGGCGAAAGAGTCAGGCTGGAAATATGGAGCTGGAGGCCCAGAAGGAGACATCTGATACGGATAAGAGTGACAATCCAGATTCTAAGTCCCATGGCAGAAGGAACCAAAGAAAGTAG 1515 0.4284 MASDLSSGLSKKTSVFGLQAWELMGIIVGLFIIIILVVLSICLTSRKKSRRVNGMLPLSRMLSVSDEIKEIRVDQVSANNHPQNGAFMSLYDRFSDRESEKVLIQAKNGENSSQSGSFVHLKKDDGGSQSGEESGAKSVSTYWSSSHPITAPSPLSGLPEFSHLGWGHWFTLRDLELATNRFSKDNVIGEGGYGVVYQGHLINGSPVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGTHRLLVYEYVNNGNLEQWLHGAMRQYGFLTWDARIKILLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDDFNAKISDFGLAKLLGAGKSHITTRVMGTFGYVAPEYANSGLLNEKSDVYSFGVLLLEAITGRDPVDYSRPAAEVNLVDWLKMMVGNRRAEEVVDPNIETRPSTSALKRALLTALRCVDPDAEKRPKMSQVVRMLESEEYPIPREDRRRRKSQAGNMELEAQKETSDTDKSDNPDSKSHGRRNQRK* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2368 504 SMART serkin_6 182 453 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g2368 504 ProSitePatterns Protein kinases ATP-binding region signature. 188 211 IPR017441 GO:0005524
Apr9g2368 504 ProSiteProfiles Protein kinase domain profile. 182 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g2368 504 MobiDBLite consensus disorder prediction 106 143 - -
Apr9g2368 504 SUPERFAMILY Protein kinase-like (PK-like) 166 461 IPR011009 -
Apr9g2368 504 MobiDBLite consensus disorder prediction 453 504 - -
Apr9g2368 504 ProSitePatterns Serine/Threonine protein kinases active-site signature. 304 316 IPR008271 GO:0004672|GO:0006468
Apr9g2368 504 PANTHER OS01G0323000 PROTEIN 2 504 - -
Apr9g2368 504 Gene3D Phosphorylase Kinase; domain 1 164 257 - -
Apr9g2368 504 PANTHER RECEPTOR-LIKE KINASE PLANT 2 504 - -
Apr9g2368 504 Gene3D Transferase(Phosphotransferase) domain 1 258 470 - -
Apr9g2368 504 MobiDBLite consensus disorder prediction 453 497 - -
Apr9g2368 504 Pfam Protein kinase domain 183 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g2368 504 CDD STKc_IRAK 188 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2368 Apr-Chr9 31279587 31284173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2368 17 456 Trihelix Transcription Factor Family AT1G70460 39.778 7.02e-95 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Apr9g2368 Pkinase 5.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2368 - - gmx:100793499 929.858
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2368 9 31279587 31284173 Apr9g2368 9 31279587 31284173 ECH
Apr9g2368 9 31279587 31284173 Apr1g2482 1 34421423 34426640 PCT