Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2365 ATGGAGGCTGAGTTTGGAGGGAAGAATCAGTACTTGTATATGAAGGCTGTTGGCAATGGGAAGAGGAGTTTGGAATGGGATTTGCATGATTGGAATTGGGATGGTGATCTTTTCACTGCTCAACCACTAAATTCAGTGCCATCAGATTGTAGGAGTCGCCAGTTTTTCCCACCACATCCTGAAACTCCTGCAAAAAATACTAATACATCCAACAATTTGTCGTCTTCTATATTCAGCTCCGGAGAAGGAAAGAGAGAATTGGAGAAAAGAAGGAGGGGTGTTGTAGGTGAAGTTGCAAGGGAGGAACTGAATGATGAGGGTGGTTCTCTTAATTTGAACCTTGGGGGTCAAGTTTACCCTGTTATGGTGGAAGGGGAGGAAAAAAGTGGAAAGAAGACAAAGGTAATTGAGAGCACTGCTCCTACTACTACTACTTCTAACCGTGCTGTTTGTCAGGTGCAAGATTGTAGGGCTGATCTTAGTAATGCCAAGGATTACCACCGTCGGCACAAGGTTTGTGATGTGCATTCTAAGGCCACTAAGGCACTAGTAGGAAATGTTATGCAGCGTTTTTGTCAACAGTGTAGCAGGTTTCATGTTCTTCAAGAGTTTGATGAAGGGAAGAGAAGTTGTCGTAGGCGTCTGGCAGGCCATAATAAGAGGAGGAGGAAAACTCATCCTGATGTTACTGTTGTTGATGGAGGCTCTCTGAATGATGAAAGGGGCAGTAGCTATCTATTAATGAGTCTGCTACGGATACTGACCAATATGCATTCAAATGGCTCAGATCATACAAGGAACCAGGATATCCTATCTCATCTGCTGAGGAACCTGGGAAGTCTGGCTGGTACAATTAATGGAAGAAGTTTAGCCTCCTTATTGGAGGAATCTAAAGGTTTGTTAAATGCTGGGATGCCCGGAGCTTCTCATGATAAACCCAATCTTAATTCAAATGGTCCTGAAGCTTCCAGGCCTTCTGGTTCTTCCATCAAATCAGATACTGGCTTCATCGCTCAGGACCCTCCAATGTCTGTGGCACAGTGTGAAACCATGCCTGCTTATGGTGTGACACAAAAATGTATACCTTCAGGTGATGGTGGAGTTGGAAATTTAGAACTTCCTTCAGGACTACTGCCCTCAAGTGTAAGTCAATCAATGGACAACCTTCCGTCCCATTTAACCGCAGCAGAGCCAGAGACTACAGTTGGAAGGGACAGATTAAACGACATTGACCTGAATAATGCATACAGTGATATACAAAATACTGTTGAGAATCCTAAGAAGCCTTATCCTCATGTGGCTTCAGAGATGGGGTCTATTGATCATCCTTCATGGTTGCAATGCAATTCCCTCAAATATAGTCCTCCGCAAACAGGTACAAACGCAGAGTCAACCTCAACCCGATCTCCATCTAGTTCCAGTGGAGAAGCTCAGAGTCGCACAGGTCGAATTGTCTTTAAACTCTTTGGAAAGGATCCAAATGATTTTCCCCTTATTCTCCGATCGCAGATCCTCAACTGGTTATCCCATAGTCCCACTGAGATAGAGAGCTATATAAGGCCAGGCTGTATCATATTAACAATATATCTCCGTCTAGAAAAATCTGCATGGGAGGAGCTCTGCTGTAATCTAGGATCCAACCTGAGAAAGCTTCTTGCTGGGTCAAATGATTCTTTTTGGAAAACAGGATGGATATATGCAAGGGTGCAACACTCTGTAGCTTTTCTTAATAATGGTCAGGTAATCTTAGATGTGCCACTGCGTTTCAAAAGTCCACAAGATTGTAAGATATCATACATTAAACCACTTGCTGTTCCTAAAAGTTCTTGTGCTCAATTTATTGTGAAAGGATTCAACCTTTTTCAGTCTAGCACAAGGTTGTTCTGTGCACTTGAAGGAAAATATCTGGTACATCATAGTTGTCTTGATTTGATTGATGGAGCTGATTTAGCCACTCAGTATCTCAGCTTCTCTTGTCAAATACCAAATGTAACTGGGAGGGGGTTTATTGAGGTGGAAGATCATGATCTTAGCAGTTGTTCCTTTCCATTTATAGTAGCAGAGCAAGATGTTTGTTCAGAGATCTGCAAGCTGGAAAATGTGGTTGAGGCAGCTGAGACTACTGACGACATCAAGATAAAAAACCAACAAATGGAAGAAAAGACTCGAGCTTTGGATTTCTTACAAGAAATGGGCTGGCTCCTTCATAGATCTCATGTGAAAGTTAGGCTAGGTTCCATGGTTCCTACCCATGATCCCTTCCAATTCAAGCGGTTCATGCGGCTTGTTGACTTCTCCATGGACCATAGTTGGTGTGCTGTGATGAAAAAACTCTTGGACATTATATTTGAGGGTGGTGTTGATACAGGAGAGCATGCTTCCATTGACCTTGCATTGTTAGACATGGGCCTTCTACATAGAGCTGTGAAGAGAAACTGTAGGCCTATGGTAGAACTACTATTAAGACTTACTTCATATGGTGCAGACAGTGAAGTGAATCAAGTTGACAAGGCTAATGATAAGTTCTTATTTAGACCTGATACTGTTGGCCTAGCTGGGTTGACTCCTCTTCATGTTGCAGCAAGTATGAATGGCACAGAAAATGTGTTGGATGCATTAACCGATGATCCAGGAATGTTAGGAATTGAAGCATGGAAAAGTGCTCAGGACAACAGAGGTTTGACACCCAATGACTACGCATGCCTCCGAGGATATTACTCCTACATTCAACTTGTCCAAAAGAAGATCAACAAACAAGGTGAAAGACAACATGTGGTTCATATCCTTAGTACTGTTGTAGATAGTAACACAAAGCAGAAGTCAGATGGGCATAGGACATGTAAAGTTTCAAGTTTGCAGACTGAGAAGATTGAAACCGCAGCAACGGCGCGTCAATGTGGGCTATGCCAGCATAAGCTGGCTTATGGTGGCATGAGAACAACACTGGTTTATAGGCCAGCCATGCTCTCAATGGTGACCATAGCAGCAGTTTGTGTCTGTGTGGCTTTGCTCTTTAAAAGCTCACCTAGAGTTTATTATGTGTTCCAACCCTTCAACTGGGAATCATTGAAGTATGGAACAATCTAA 3087 0.4282 MEAEFGGKNQYLYMKAVGNGKRSLEWDLHDWNWDGDLFTAQPLNSVPSDCRSRQFFPPHPETPAKNTNTSNNLSSSIFSSGEGKRELEKRRRGVVGEVAREELNDEGGSLNLNLGGQVYPVMVEGEEKSGKKTKVIESTAPTTTTSNRAVCQVQDCRADLSNAKDYHRRHKVCDVHSKATKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHPDVTVVDGGSLNDERGSSYLLMSLLRILTNMHSNGSDHTRNQDILSHLLRNLGSLAGTINGRSLASLLEESKGLLNAGMPGASHDKPNLNSNGPEASRPSGSSIKSDTGFIAQDPPMSVAQCETMPAYGVTQKCIPSGDGGVGNLELPSGLLPSSVSQSMDNLPSHLTAAEPETTVGRDRLNDIDLNNAYSDIQNTVENPKKPYPHVASEMGSIDHPSWLQCNSLKYSPPQTGTNAESTSTRSPSSSSGEAQSRTGRIVFKLFGKDPNDFPLILRSQILNWLSHSPTEIESYIRPGCIILTIYLRLEKSAWEELCCNLGSNLRKLLAGSNDSFWKTGWIYARVQHSVAFLNNGQVILDVPLRFKSPQDCKISYIKPLAVPKSSCAQFIVKGFNLFQSSTRLFCALEGKYLVHHSCLDLIDGADLATQYLSFSCQIPNVTGRGFIEVEDHDLSSCSFPFIVAEQDVCSEICKLENVVEAAETTDDIKIKNQQMEEKTRALDFLQEMGWLLHRSHVKVRLGSMVPTHDPFQFKRFMRLVDFSMDHSWCAVMKKLLDIIFEGGVDTGEHASIDLALLDMGLLHRAVKRNCRPMVELLLRLTSYGADSEVNQVDKANDKFLFRPDTVGLAGLTPLHVAASMNGTENVLDALTDDPGMLGIEAWKSAQDNRGLTPNDYACLRGYYSYIQLVQKKINKQGERQHVVHILSTVVDSNTKQKSDGHRTCKVSSLQTEKIETAATARQCGLCQHKLAYGGMRTTLVYRPAMLSMVTIAAVCVCVALLFKSSPRVYYVFQPFNWESLKYGTI* 1029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2365 1028 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 14 1027 - -
Apr9g2365 1028 SUPERFAMILY Ankyrin repeat 804 911 IPR036770 -
Apr9g2365 1028 Gene3D - 791 937 IPR036770 -
Apr9g2365 1028 ProSiteProfiles Zinc finger SBP-type profile. 148 225 IPR004333 GO:0003677
Apr9g2365 1028 MobiDBLite consensus disorder prediction 311 335 - -
Apr9g2365 1028 Gene3D - 142 212 IPR036893 GO:0003677|GO:0005634
Apr9g2365 1028 MobiDBLite consensus disorder prediction 451 478 - -
Apr9g2365 1028 Coils Coil 711 731 - -
Apr9g2365 1028 MobiDBLite consensus disorder prediction 61 81 - -
Apr9g2365 1028 SUPERFAMILY SBT domain 149 230 IPR036893 GO:0003677|GO:0005634
Apr9g2365 1028 Pfam SBP domain 151 224 IPR004333 GO:0003677
Apr9g2365 1028 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 14 1027 IPR044817 GO:0003677
Apr9g2365 1028 MobiDBLite consensus disorder prediction 215 235 - -
Apr9g2365 1028 MobiDBLite consensus disorder prediction 49 92 - -
Apr9g2365 1028 MobiDBLite consensus disorder prediction 302 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2365 Apr-Chr9 31254268 31261580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2365 175 304 SBP-box Gene Family AT2G47070 59.398 9.05e-39 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Apr9g2365 SBP 1.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2365 - - gsj:114419913 1615.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2365 9 31254268 31261580 Apr9g2365 9 31254268 31261580 ECH
Apr9g2365 9 31254268 31261580 Apr1g2483 1 34437856 34446300 PCT