Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2357 ATGACCAACACCAGAAATTCAAATTATATTCGGAACGCACAATTAGGGTTTGAAGAGATTCTACGAGAAGCAGAGCATCGTTGGCTTCGACCTGCTGAAATATGTGAGATACTTCGTAATTATAGGAAGTTTGAGTTAACACCAAATCCACCTGTTAGGCCTCCAGGTGGATCACTATTCTTGTTTAATCGAAAAGCACTTCGTTACTTTCGCAAGGATGGTCACCGGTGGAGGAAGAAAAAAGATGGGAAGACTGTAAGAGAAGCTCATGAAAAGTTGAAGGCTGGTAGTTTGGATGTCTTGCATTGTTACTATGCTCATGGTGAGGATAATGAAAACTTCCAACGGAGAAGTTATTGGATGCTTGATGAGCAGTTAGAGCACATTGTCCTTGTGCATTATCGAGAAATTAAAGAGGGCTGCAGGTCTTGCATCTCACATTCACCTGTAGTTCCTGTAACCCTGGTTGGTAGTTCTCAAAATAGTTCAGTGCCTTCCTCTACCAAAATAAACTCACAAATATCTGTTGTTCAAACATCTTTTACATCAAGTGCAAATAAAGTTGGTCAGAATGGACAAGCTTCAGAGTATGAGGATGTCAACTCAGAGACTCAAGCCTCATCTCATGATCAGCCTATCAGCAAATCCATGCTTCACAATGCACCTCAGCTTGCACATGAAGCCACTGGGTTCTCTGAGTTGTTGAGGAGCCCCTTGATTTCATCTTTGTCATCTTCTTTTCCTAGCCAGTCTCCTGGTACTGGCTTGTCTACCTGGACCTTAATTCCGAACTACAGCAGAAATACAATTAACATGCATGATGGAGAACGGCATGTTGAAGGATCCGTTGAAGGCTCTGAAACTGACTTCAATGTTCAAAAGCTAAGCAATGCTAGGTTAGATGTTGATTGCAGAATACAAGATGGTGTAATTTTCAGAGATAGGCTCATTACTAACACATACATCCAGCCAGTTAAAGGAGCTTCACAAACTGTTAATCAGGTGCAAAAGGAGGATGGTCTAGATTCATTTCGTACTCAATGCCCTGATCATGCTGATCATCCAGATGCAACTACTACAATCCTAGTTGAACAAAAACTTCAAGATGATGATACAGACAATGATGAATCAGAACGTGTTGAATCTGGGAAATTGAAAAAGCTTGATAGTTTTGGAAGGTGGATGGATAAGGAGATTGGTGGAGACTGTGACAATTCCTTGATGGCTTCAGATTCTGGTAATTATTGGAGTACACTTGATGCTCAGAATGAAGATAAGGAGGTGTCTAGTTTACACCACATGCAGTTGGACCAAGGCAATTCGTTAGGACCTTCTCTTTCCCAAGAACAACTATTTAGTATCCATGACTTTTCTCCAGATTGGGCCTATACTGGGGTTAAAACAAAGGTTTTAATAGCTGGTACATTTCTGGGAAGTAAAAAGCTCTCTAGTGAGACCAAATGGGGATGTATGTTTGGTGAAATTGAGGTTTCCGCTGAAGTTTTGGCAGAGAATGTCATACGGTGTCAGACTCCTCTTCATTCACCTGGCCGGGTTCCATTCTATGTTACCTGCAGTAATAGGTTAGCCTGCAGCGAGGTCAGGGAATTTGAATATCTTGAAACTCCAACCAAATTTTTACGTCCTGTGGGTATTAAAATCTCAGCAGAAGATGAGATACGGCTTCAAATGCGGCTTCTTAAGCTAGTAGACTTGGGAGCTGACAATAAGCAGTGGAAGTGCTCTGTTTCTGAATGTGAAAAATGTAAACTCAAGGGAACAATGTATTCCATGAGAGATGGTAGTGGAGTATTTGAAGAAACTTTCCATATTGATGGAGTTGATCATATAAAACCTAGAGATGTATTATTCCAGAGATTAATGAGAGACAAGCTTTATGAGTGGTTAGTATTTAAGGTTCATGAAGGAGCAAAAGGACCACGTGTTTTGGATGATGAAGGCCAAGGAGTAATACATTTAGCAGCTGCACTTGGTTATGTGTGGGCTATGGGCCCTTTAGTTGCTGCTGGTATTAGTCCTAACTTTAGAGATGCTCGAGGAAGAACAGGACTTCACTGGGCATCATATTTTGGGAGAGAAGAAACTGTGATTGCGCTGGTCAAATTAGGTGCGGCTCCAGGTGCCGTTGAGGATCCAACAACAGCATTTCCTCGAGGTCAAAAAGCAGCTGATTTAGCTTCAAATAGAGGACATAAAGGCATTGCTGGGTATTTGGCCGAGACAGATTTGACAAATCAATTATCTATATTGACTATCAAGGAAAATGACACTAGTAATATTGCCACAACAATAGCAGCTGACAGTGCTTTTGAGTCTGTTGACAGTGACTCATCTAATATGACAATGGATGAGCAACACTATCTGAAAGAATCACTTGCTGTGTTTCGAAAATCAGCTCAGGCAGCTGCTTCAATCCTAGCTGCCTTTAGAGCAAGGTCGTTCTGTCAGAGACAATTAGCCAAGCGCAGCAGTGATATTTCTGAAGCAGTGCTTGACCTAGTTGCTGATTCTTTAAACAAGGTACAGAAGATGGGTCACTTTGAGGATTATTTACATACTGCAGCTTTAAGGATCCAAAAGAGATATCATGGGTGGAAAGGAAGGAAAGATTTTCTGAAAATACGTGACCGCATTGTAAAAATTCAGGCTCATATTAGAGGACACCAAGTTCGTAAGCAGTACAAAAAAGTTGTTTGGTCTGTTGGCATTGTGGAAAAGGCAATACTGCGCTGGAGACGGAAAGGAGCTGGTCTGCGAGGATTCCGGATTGGGCAGACAGTTGGTAATGTGGCTAAAGATGCTGACAAAAATGACGAGTATGAATTTTTGAGCATTGGAAGGAGACAGAAATCAGAAGATGTAAAGAAAGCTCTGGATAGAGTTAAGTCCATGGTTCGTAACCCAGTGGCACGGGATCAGTATATGAGGCTCATCATAAAATATCAGAAATTGAAGATTGATGATGGCGGAAGTAGTCAATCACAACATGTTGGCTAG 3018 0.4145 MTNTRNSNYIRNAQLGFEEILREAEHRWLRPAEICEILRNYRKFELTPNPPVRPPGGSLFLFNRKALRYFRKDGHRWRKKKDGKTVREAHEKLKAGSLDVLHCYYAHGEDNENFQRRSYWMLDEQLEHIVLVHYREIKEGCRSCISHSPVVPVTLVGSSQNSSVPSSTKINSQISVVQTSFTSSANKVGQNGQASEYEDVNSETQASSHDQPISKSMLHNAPQLAHEATGFSELLRSPLISSLSSSFPSQSPGTGLSTWTLIPNYSRNTINMHDGERHVEGSVEGSETDFNVQKLSNARLDVDCRIQDGVIFRDRLITNTYIQPVKGASQTVNQVQKEDGLDSFRTQCPDHADHPDATTTILVEQKLQDDDTDNDESERVESGKLKKLDSFGRWMDKEIGGDCDNSLMASDSGNYWSTLDAQNEDKEVSSLHHMQLDQGNSLGPSLSQEQLFSIHDFSPDWAYTGVKTKVLIAGTFLGSKKLSSETKWGCMFGEIEVSAEVLAENVIRCQTPLHSPGRVPFYVTCSNRLACSEVREFEYLETPTKFLRPVGIKISAEDEIRLQMRLLKLVDLGADNKQWKCSVSECEKCKLKGTMYSMRDGSGVFEETFHIDGVDHIKPRDVLFQRLMRDKLYEWLVFKVHEGAKGPRVLDDEGQGVIHLAAALGYVWAMGPLVAAGISPNFRDARGRTGLHWASYFGREETVIALVKLGAAPGAVEDPTTAFPRGQKAADLASNRGHKGIAGYLAETDLTNQLSILTIKENDTSNIATTIAADSAFESVDSDSSNMTMDEQHYLKESLAVFRKSAQAAASILAAFRARSFCQRQLAKRSSDISEAVLDLVADSLNKVQKMGHFEDYLHTAALRIQKRYHGWKGRKDFLKIRDRIVKIQAHIRGHQVRKQYKKVVWSVGIVEKAILRWRRKGAGLRGFRIGQTVGNVAKDADKNDEYEFLSIGRRQKSEDVKKALDRVKSMVRNPVARDQYMRLIIKYQKLKIDDGGSSQSQHVG* 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2357 1005 Pfam IPT/TIG domain 454 539 IPR002909 -
Apr9g2357 1005 SMART CG_1_2 20 138 IPR005559 GO:0003677
Apr9g2357 1005 SUPERFAMILY Ankyrin repeat 640 747 IPR036770 -
Apr9g2357 1005 ProSiteProfiles IQ motif profile. 858 887 IPR000048 GO:0005515
Apr9g2357 1005 ProSiteProfiles CG-1 DNA-binding domain profile. 17 143 IPR005559 GO:0003677
Apr9g2357 1005 Pfam IQ calmodulin-binding motif 883 902 IPR000048 GO:0005515
Apr9g2357 1005 ProSiteProfiles IQ motif profile. 881 905 IPR000048 GO:0005515
Apr9g2357 1005 Gene3D - 628 751 IPR036770 -
Apr9g2357 1005 Pfam CG-1 domain 23 136 IPR005559 GO:0003677
Apr9g2357 1005 ProSiteProfiles Ankyrin repeat profile. 686 718 IPR002110 GO:0005515
Apr9g2357 1005 Gene3D Immunoglobulins 447 545 IPR013783 -
Apr9g2357 1005 SUPERFAMILY E set domains 454 539 IPR014756 -
Apr9g2357 1005 MobiDBLite consensus disorder prediction 186 213 - -
Apr9g2357 1005 CDD IPT 453 541 - -
Apr9g2357 1005 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 18 978 - -
Apr9g2357 1005 Gene3D - 856 905 - -
Apr9g2357 1005 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 853 908 IPR027417 -
Apr9g2357 1005 SMART iq_5 857 879 IPR000048 GO:0005515
Apr9g2357 1005 SMART iq_5 880 902 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2357 Apr-Chr9 31199528 31207580 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2357 121 1001 CAMTA Transcription Factor Family AT5G09410 35.827 5.62e-160 492
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Apr9g2357 CG-1 4.6e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2357 K21596 - gmx:100818336 1608.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2357 9 31199528 31207580 Apr9g2357 9 31199528 31207580 ECH