Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2349 ATGATCGTGAGTCAGAAGATGGTAGCGGAAGCGGAAATTATCTGTCAGCAGAGCATTCCCATGTTGGACGTGAAGTATCACCTTTGCGTTGCACAAGAACACAACGTCAAGGTTGAGATTTCTCCCACCTCACCTTCACCTTCTGTTCCGATCTTTGGCCAAGCGGTGAGTTGCTCAGAGATCATTAAAGAGTCCATTTTGGAGACCCCTGCAATGAATTTTGTCCCAAACGTGCGTTCTGGTAGCTATGCTGAAATTGGACCGCGGGTATCTATGGATGATGAACACATTCGGATAGATAATCTAGCTGCCCACCTTGGATTTGTGTTCAAGTACCCAATACCAAGTGCGTTTTATGCTGTTTTTGATGGTCACGGAGGGCCTGATGCAGCTGCTTTTGTTAAGAGGAATGCTATGAGACTATTTTTTGAAGATGCAAACATGCTGCAGTCATATGAAACTGATGAAGTTTTTCTAAAGAAGTTGGAGGATTCCCATCGAAGAGCTTTTTTACGTGCAGACCTTGCCTTGGCTGATGAACAAAGTGTTAGTAGTTCATGTGGGACCACTGCATTGACTGCCCTTGTACTTGGAAGACATTTGCTTGTTGCTAATGCCGGTGACTGTCGAGCAGTTCTTTGCAGGAGAGGTGTGGCTGTTGACATGTCACATGATCACAGGCCAAGTTATTTACCAGAAAGCAGGAGAGTGGAGGAGTTAGGTGGATTCATTGATGGTGGATATCTCAATGGTTATCTTTCAGTAACTCGTGCCCTTGGGGATTGGGACTTGAAATTTCCACTTGGTGCTGCATCCCCTCTTATTGCTGAGCCAGATGTTCAACTGGTTACATTGACAGAGGCTGATGAGTTCTTGATCATTGGTTGTGATGGGATTTGGGATGTAATGTCTAGTCAAGTTGCAGTTAGTCTTGTTCGCCGAGGATTAAGAAGGCATGATGACCCACAGCAATGTGCCAGAGAACTTGTCAAGGAAGCATTGCGCCTACATACATCAGACAATCTCACAGTGATTGTTATATGCTTGTCCCCTGTTGAAAGCATTGTTGAATCATGTCTGCCCCAAAGGCGAAGATTCAAAGCTTGTATTTTGTCTGAAGAGGCTCGTAATAGACTGAAGAGCTTGATAGAGGGAAATTGA 1161 0.447 MIVSQKMVAEAEIICQQSIPMLDVKYHLCVAQEHNVKVEISPTSPSPSVPIFGQAVSCSEIIKESILETPAMNFVPNVRSGSYAEIGPRVSMDDEHIRIDNLAAHLGFVFKYPIPSAFYAVFDGHGGPDAAAFVKRNAMRLFFEDANMLQSYETDEVFLKKLEDSHRRAFLRADLALADEQSVSSSCGTTALTALVLGRHLLVANAGDCRAVLCRRGVAVDMSHDHRPSYLPESRRVEELGGFIDGGYLNGYLSVTRALGDWDLKFPLGAASPLIAEPDVQLVTLTEADEFLIIGCDGIWDVMSSQVAVSLVRRGLRRHDDPQQCARELVKEALRLHTSDNLTVIVICLSPVESIVESCLPQRRRFKACILSEEARNRLKSLIEGN* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2349 386 ProSitePatterns PPM-type phosphatase domain signature. 118 126 IPR000222 GO:0043169
Apr9g2349 386 ProSiteProfiles PPM-type phosphatase domain profile. 79 349 IPR001932 -
Apr9g2349 386 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 7 373 - -
Apr9g2349 386 SUPERFAMILY PP2C-like 73 351 IPR036457 -
Apr9g2349 386 CDD PP2Cc 78 349 IPR001932 -
Apr9g2349 386 SMART PP2C_4 69 347 IPR001932 -
Apr9g2349 386 Pfam Protein phosphatase 2C 89 341 IPR001932 -
Apr9g2349 386 PANTHER PROTEIN PHOSPHATASE 2C 7 373 IPR015655 GO:0004722|GO:0006470
Apr9g2349 386 SMART PP2C_SIG_2 94 349 IPR001932 -
Apr9g2349 386 Gene3D - 67 353 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2349 Apr-Chr9 31083583 31086116 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2349 1 385 PP2C-type Phosphatase Gene Family AT1G48040 56.642 1.79e-150 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Apr9g2349 PP2C 1.1e-62 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2349 K14803 - gmx:100775577 687.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2349 9 31083583 31086116 Apr9g2349 9 31083583 31086116 ECH
Apr9g2349 9 31083583 31086116 Apr1g2026 1 29742423 29744642 PCT