Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2345 ATGGATGTAAAAGGAAGAGGAAACAACACCTTATGTGAGGACGAGATGGACCTCAGAAGAGGCCCTTGGACCGTTGATGAGGACGACACCCTTGTCAATTACATTGCCACTCATGGCGAAGGTCGTTGGAATACCCTCGCCCTCTCTGCCGGCCTCAAACGAACGGGTAAGAGTTGCAGATTGAGGTGGCTGAACTATCTCCGTCCTGATGTTCGACGTGGAAACATCACACTTGAAGAACAACTTTTGATCCTGGAGCTCCATTCTCGCTGGGGAAACCGATGGTCGAAAATTGCCCAATATTTGCCTGGGAGAACCGACAATGAGATAAAGAACTATTGGAGAACCCGAGTCCAAAAGCATGCCAAACAACTCAAATGTGACGTGAATAGCAAGCAATTCAAGGACACCATGCGCTACCTTTGGATGCCGCGGCTGGTGGAACGAATTCAGGCAGCCGCTGCGGCTTCGACTACTTCTGCTACTACTACCACTGCTGCTACGATTTCTCCAACTAACTTATCCACCACCACAACTGTCACGACCAATAACGGGTACAACTACGGCAACAACCTCAATAACAACAATTTTGAGGTCAATAATCATGGCGGTAAAATGGGGTTAACTTCTTCAGTTATGAACAACGATCTTGTGGGTTCACAAAGGGCACAAAGTTATACCCCAGAGAATAGTAGCACGGCCGCGTCATCATCAGACTCGTTTGGGACTCAGGTCTCAACGATCTCTGATTTGAATGATTATTACAGTGTTCCTGTTAGTAGTAACAATAACCCTAATTCCATACATTATTACCAACCCTCTCAAATGAGTTATTCGGATTGCATCACAAGCCCATCTGGGTTGTTCCCCCAGGGACTGGATTTCCAAGCCATGGAGCCAAACAACCCTTGGAACATGCAAAGTGGGGACTCGTCCGACAATTTTTGGAACGTTGAAAACATGTTGTTTTTACAGCAGCAACTTATGAATGACAACATGTAA 1002 0.4631 MDVKGRGNNTLCEDEMDLRRGPWTVDEDDTLVNYIATHGEGRWNTLALSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDTMRYLWMPRLVERIQAAAAASTTSATTTTAATISPTNLSTTTTVTTNNGYNYGNNLNNNNFEVNNHGGKMGLTSSVMNNDLVGSQRAQSYTPENSSTAASSSDSFGTQVSTISDLNDYYSVPVSSNNNPNSIHYYQPSQMSYSDCITSPSGLFPQGLDFQAMEPNNPWNMQSGDSSDNFWNVENMLFLQQQLMNDNM* 334
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2345 333 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
Apr9g2345 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 67 IPR017930 -
Apr9g2345 333 Pfam Myb-like DNA-binding domain 20 67 IPR001005 -
Apr9g2345 333 Pfam Myb-like DNA-binding domain 73 116 IPR001005 -
Apr9g2345 333 Gene3D - 17 73 - -
Apr9g2345 333 Gene3D - 77 140 - -
Apr9g2345 333 MobiDBLite consensus disorder prediction 223 242 - -
Apr9g2345 333 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Apr9g2345 333 PANTHER MYB TRANSCRIPTION FACTOR 1 328 - -
Apr9g2345 333 SUPERFAMILY Homeodomain-like 17 114 IPR009057 -
Apr9g2345 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 122 IPR017930 -
Apr9g2345 333 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 328 IPR044676 GO:0003700|GO:0006355|GO:0043565
Apr9g2345 333 CDD SANT 22 67 IPR001005 -
Apr9g2345 333 SMART sant 19 69 IPR001005 -
Apr9g2345 333 SMART sant 72 120 IPR001005 -
Apr9g2345 333 CDD SANT 93 116 IPR001005 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Apr9g2345 Apr-Chr9 31040456 31042208 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2345 1 324 MYB Transcription Factor Family AT3G06490 56.395 1.12e-92 277
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr9g2345 Myb_DNA-binding 2.1e-14 CL0123
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2345 K09422 - gmx:100791349 491.5
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2345 9 31040456 31042208 Apr9g2345 9 31040456 31042208 ECH