Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2327 ATGAACTACCACAACAATCGCCGGAGCCCCGCCGCCTTCCGCTCCGGCGCCGCCCCTCACAACCGTGCCTTCGATAGTCCTCCGCGTCGTTCTCCTCCCAGGGTTGGAGGCTTTCGCGCAGAGGGCCCTGGGGAATTCGGATTCGACGGTCACCAGCCACTGCCACTGTCTGGTCAGAAACGAGGGTTTCCTTTCTCCGGACGCGGTGGTTCGCCCGATCGTTTTGATGGTGGAAATTTTGCCAAACTTTTTGTTGGATCTGTTCCTCGAACCGCCACTGAAGAAGATATTCGCCCTTTGTTTGAGGAGCATGGAAATGTGATTGAGGTTGCCCTCATCAAAGATAGAAAGACAGGACAGCATCAAGGTTGTTGTTTTATAAAATATGCTACCTCAGAAGAAGCTGATCAGGCAATTAGAGCATTGCACAATCAACATACTCTTCCTGGAGGTGTTGGTCCAGTCCAAGTGCGGTATGCTGATGGTGAACGGGAACGCCTTGGTGCAGTTGAGTACAAATTATTTGTGGGCTCCCTGAACAAACAGGCGACAGTAAAAGAAGTTGAGGAAATTTTCTCAAACTATGGGCGGGTTGAAGATGTTTATCTTATGCGTGATGACAAGAAGCAAAGCCGTGGATGTGGTTTTGTTAAATACTCGCATAGAGACATGGCACTGGCAGCTATTAATGCGCTTAATGGAATCTATACAATGAGAGGTTGTGAGCAACCACTAATTGTCCGGTTTGCTGATCCTAAGAGACCTCGTCAAGGAGATTCCAGGGGTCTTGCATTTGGAGGTCCAGGATTTGGTCCTAGATTTGATGCACCTGGCACAAGACTTCCATCCAATATTACTGATCCTATCGGTGATCGTATGCCTCCCCATAATACTTGGCGTCCAATGCATCCCCCGAATATGGGACCATCTTCTAATGCTGGTCTTCATGGAATGGGACCACCATTGCTTCCAAGATCTGGTGACATGGCTTTGCCTATAAATGCAGGTGGTCCTATGACTGGCTTGGGAGGCCCCCTTGATGGCCGTTTTCAAATTCACTCTCTGTCATCAATGCCACAGCAGCCTATGCCACAAATTCCACCAGTCAATCAACAAAGATCACCATTGCAGAAACCTATTCAATCATCTCAGGAATTGCCACCTTCGCACCAGTTGTATCCTCAAGCACCGATGCCCTATCCACAAACGTCAACACTTTCATCTCTTAGGCAGCATGGTCAGCCACAACTTCCCCTCTCTGCTGGTCCTCTTACTTCTCAGCCAGTACATGGAATAAGTGGGCAATTTCCAACTTCTCAGCCCCAAACTCAGCAGAGTACTTTCTCTGCTGCAATTCCTCAGACCCCTCTTGATACCAACATGCAATCAAGTACTGCATTGACTACTCCAAATCAACAGCAAGTTCCTCCCTCTGTGCAGCAGCAGCCACTTCAACCTCTTCAGCAGTCCCCTTCTCAATTAGCTCAGATGTTGTCACAACAAACACAGACTTTACAGGCAAGTTTTCATTCATCTCAGCAGGCATTCTCCCAGCTTCAACAACAGTTACAGATGATGCAACCTTCTAGTCAAGCATTAGCACTGCAGCAAAATGCAGAAGCTACTAAAAAGCAGTCTCAATGGGCTAGAACTGTGGCTCAGGCAGCAGTCAGCACTCATGCAGCTGTACCTGCTGCAGATGTGCCTTCATCCACACCTGCCAGTGCTACTAGTACCTTACCAGCAATAAGTCAGAACATGGTTCTTGCTAAATGTAATTGGACAGAGCATATATCTCCTGAGGGCTTCAAGTACTACTATAACAGTGTCACTGGTGAAAGTCGGTGGGAGAAACCTGAGGAGTTGACATTATATGAACAGCAAAAGCAACAGCAAAGGTCTTCAGTGCAGCAATCTCAAACTCAGTCACAACCTTCATTACTACCTGCCCAGCAAGTTGCACAAATCCAACAGGTTCAGCCTCAAAGTCATCTACAAGGGCAGGTTCTCCATCATCAACAAATACAGCAGCCTTTGTCTTCTTCAGCATATGGAGTTGCAGGTCATCAAAGTGCTCAGGAAATTGGTTATAAACAGTTACATGCATCGGTTATTTCTGCTGGTGATCCTGGACGGTATTCTCAGGGTATTCATTCTACACAAGAGTTGATTTGGAAAAATTAA 2184 0.4716 MNYHNNRRSPAAFRSGAAPHNRAFDSPPRRSPPRVGGFRAEGPGEFGFDGHQPLPLSGQKRGFPFSGRGGSPDRFDGGNFAKLFVGSVPRTATEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRALHNQHTLPGGVGPVQVRYADGERERLGAVEYKLFVGSLNKQATVKEVEEIFSNYGRVEDVYLMRDDKKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCEQPLIVRFADPKRPRQGDSRGLAFGGPGFGPRFDAPGTRLPSNITDPIGDRMPPHNTWRPMHPPNMGPSSNAGLHGMGPPLLPRSGDMALPINAGGPMTGLGGPLDGRFQIHSLSSMPQQPMPQIPPVNQQRSPLQKPIQSSQELPPSHQLYPQAPMPYPQTSTLSSLRQHGQPQLPLSAGPLTSQPVHGISGQFPTSQPQTQQSTFSAAIPQTPLDTNMQSSTALTTPNQQQVPPSVQQQPLQPLQQSPSQLAQMLSQQTQTLQASFHSSQQAFSQLQQQLQMMQPSSQALALQQNAEATKKQSQWARTVAQAAVSTHAAVPAADVPSSTPASATSTLPAISQNMVLAKCNWTEHISPEGFKYYYNSVTGESRWEKPEELTLYEQQKQQQRSSVQQSQTQSQPSLLPAQQVAQIQQVQPQSHLQGQVLHHQQIQQPLSSSAYGVAGHQSAQEIGYKQLHASVISAGDPGRYSQGIHSTQELIWKN* 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2327 727 SUPERFAMILY WW domain 593 626 IPR036020 GO:0005515
Apr9g2327 727 MobiDBLite consensus disorder prediction 370 499 - -
Apr9g2327 727 Pfam WW domain 593 619 IPR001202 GO:0005515
Apr9g2327 727 SMART rrm1_1 173 248 IPR000504 GO:0003723
Apr9g2327 727 SMART rrm1_1 82 158 IPR000504 GO:0003723
Apr9g2327 727 MobiDBLite consensus disorder prediction 625 649 - -
Apr9g2327 727 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 174 241 IPR000504 GO:0003723
Apr9g2327 727 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 83 146 IPR000504 GO:0003723
Apr9g2327 727 ProSitePatterns WW/rsp5/WWP domain signature. 594 619 IPR001202 GO:0005515
Apr9g2327 727 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 172 252 IPR000504 GO:0003723
Apr9g2327 727 ProSiteProfiles WW/rsp5/WWP domain profile. 594 621 IPR001202 GO:0005515
Apr9g2327 727 Gene3D - 589 639 - -
Apr9g2327 727 PANTHER FLOWERING TIME CONTROL PROTEIN FCA 37 663 - -
Apr9g2327 727 SUPERFAMILY RNA-binding domain, RBD 172 273 IPR035979 GO:0003676
Apr9g2327 727 Gene3D - 78 169 IPR012677 -
Apr9g2327 727 SUPERFAMILY RNA-binding domain, RBD 66 166 IPR035979 GO:0003676
Apr9g2327 727 MobiDBLite consensus disorder prediction 357 499 - -
Apr9g2327 727 MobiDBLite consensus disorder prediction 333 352 - -
Apr9g2327 727 Gene3D - 170 260 IPR012677 -
Apr9g2327 727 PANTHER RNA BINDING PROTEIN 37 663 - -
Apr9g2327 727 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 81 162 IPR000504 GO:0003723
Apr9g2327 727 MobiDBLite consensus disorder prediction 1 44 - -
Apr9g2327 727 CDD RRM2_FCA 173 252 IPR034645 -
Apr9g2327 727 CDD WW 591 621 IPR001202 GO:0005515
Apr9g2327 727 MobiDBLite consensus disorder prediction 252 290 - -
Apr9g2327 727 SMART ww_5 589 621 IPR001202 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2327 Apr-Chr9 30914176 30924825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2327 81 287 Eukaryotic Initiation Factors Gene Family AT1G71770 23.671 2.29e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2327 - - gmx:100798390 1073.15