Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2326 ATGGAGGAGAAGAGAGAGAAGGAGGCAAAACCACCAAAGTCATCATCCACCATGGCAAATTCTGTCGCATTTTCCGATGAGATTCCGAACATGAGCATGAGCATGAGCACGAGCTTCAGCTTCCCTTTCTCACCCGCTTTGTCTAGCATCTTTGACATGATGCCACCACCACCATCTTCATGTGATGATCAAAAAGCTTCCAACTTTGGTGGCTTCATGGACTTGTTGGTTGCTCAAGATTATAGCCCTTCTTTATTCGATTGGCTCCCAAACTTCACCGCCACGTCAGCTTCCGCCACCCAAACCACCCACCCTCTTCCGTCGCCGGCGAGCTCCAATGTCCCCGACGGCTCCGAAGTCTTGAACACTCCGGCGTCCCCCAACTCCTCTTCGATTTCGTCCTCCTCCAATGAAGCTCTCGTCGCCAACAAAGCAACGGGGAATGAACATGAAGCAGAGGACGAAGACGGAGATGCAGGCAAAGGAGAGGATCAAGATCAAGACAAAACTAAGAAACAGCTGAAGCCAAAGAAGAAGAACCAAAAGAAACAAAGAGAGCCAAGATTTGCGTTCATGACAAAGAGCGAAGTGGATCATCTAGACGATGGCTATAGGTGGCGAAAGTACGGTCAAAAAGCCGTAAAAAACAGCCCACATCCAAGGAGCTACTATCGTTGCACCACCACGGGTTGCGGCGTGAAGAAGCGCGTGGAGCGTTCCTCCGACGACCCGTCGGTGGTGGTCACCACCTATGAAGGGCAACACACCCACCCTTGTCCTGCCACGTCACGGGCTAGCCTCGGGTTCATGCACGAAACGGGTGGGTTCGGACCCACTAGTGGACTCGGGGGTTCACCCCACTATTTGCTGCCACAACAACACCAACACTTTCGGGACCAAAATGTGCAACAACAAGCAGTAGCAGCAGCAGCTTTGTTATACAACTCCACCTCATCATCGCCTTTGAACATTGTTAACTCGGCTTCTAGTAATTTTGCCAATACATCGTTGTTTAGTGGCTTCCTTCAGGATCAAGAGAATCTTCGATGCTTTGTGCCGTCTAGGTTGATGGGTCCTCAGGCTTTGTTAAGGGACAATGGGCTTCTTCAAGACATTGTGCCTACGCAGATGAGGAAGGAGGAGAAGCAAGATCACGAGTAG 1161 0.5073 MEEKREKEAKPPKSSSTMANSVAFSDEIPNMSMSMSTSFSFPFSPALSSIFDMMPPPPSSCDDQKASNFGGFMDLLVAQDYSPSLFDWLPNFTATSASATQTTHPLPSPASSNVPDGSEVLNTPASPNSSSISSSSNEALVANKATGNEHEAEDEDGDAGKGEDQDQDKTKKQLKPKKKNQKKQREPRFAFMTKSEVDHLDDGYRWRKYGQKAVKNSPHPRSYYRCTTTGCGVKKRVERSSDDPSVVVTTYEGQHTHPCPATSRASLGFMHETGGFGPTSGLGGSPHYLLPQQHQHFRDQNVQQQAVAAAALLYNSTSSSPLNIVNSASSNFANTSLFSGFLQDQENLRCFVPSRLMGPQALLRDNGLLQDIVPTQMRKEEKQDHE* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2326 386 SUPERFAMILY WRKY DNA-binding domain 192 260 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr9g2326 386 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 68 375 IPR044810 GO:0003700
Apr9g2326 386 PANTHER WRKY TRANSCRIPTION FACTOR 48-RELATED 68 375 - -
Apr9g2326 386 MobiDBLite consensus disorder prediction 99 190 - -
Apr9g2326 386 SMART WRKY_cls 200 259 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr9g2326 386 Pfam WRKY DNA -binding domain 201 258 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr9g2326 386 MobiDBLite consensus disorder prediction 1 22 - -
Apr9g2326 386 MobiDBLite consensus disorder prediction 99 143 - -
Apr9g2326 386 ProSiteProfiles WRKY domain profile. 195 260 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr9g2326 386 Gene3D WRKY domain 184 261 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2326 Apr-Chr9 30902620 30910276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2326 14 380 WRKY Transcription Factor Family AT5G49520 44.359 2.64e-60 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Apr9g2326 WRKY 3.5e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2326 - - gmx:100808190 437.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2326 9 30902620 30910276 Apr9g2326 9 30902620 30910276 ECH
Apr1g2048 1 29984584 29986917 Apr9g2326 9 30902620 30910276 PCT