Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2320 ATGCTTCTGGCATTGATGAATCTGCTCTCGCTTTGTTGGAAGCCATTTGGCCGCGATGCTGATCGATTCGATTCCATTGGAGTTATTGGGAGCAGTTTCGCTGCAAGAGAAGGCAAAGACGGCTTGCTCTGGTTCCGCGACGTCGGAAAATATGGCTCCGGCGATTTCTCCATGGCCGTCGTTCAGGCCAACCAGGTTCTCGAAGACCAGAGCCAGATCGAGTCTGGTCCTCTCGGCACCTTCGTCGGTATCTACGATGGTCACGGAGGACCCGACGCATCCAGATACGTATGCGATCACTTGTTTCGCCATTTTCAAGCAATATCAGCTGAGTCACGCGGGGTTGTGACAACTGAGACTATTGAAAGGGCATTCCGCCAAACGGAAGAGGGGTACACTGCCCTCGTGTCAGACTTGTGGAATACTCGACCTCAAATTGCAAGTGCTGGGTCCTGTTGTCTTGTTGGAGTGATTTTTCAGCAGACACTCTTTGTGGCAAACGTTGGAGACTCCCGCGTTGTATTGGGTAAGAAAGTTGGCAACACTGGAGGTGTTGCTGCAATTCAGCTGTCTACGGAACACAATGCAAATCTTGAGGCTGTTAGACAGGAACTTAAAGAGTTACACCCTAATGATCCCCAAATTGTTGTCCTCAAACATGGAGTATGGAGAGTGAAAGGCATCATTCAGGTCTCTAGATCTATTGGTGATGTATATATGAAACACGCGCAGTTTAATCGGGAACCACTTAATCCAAAATTCAGACTTCCTGAACCAATGAACATGCCTATCTTGTCTGCTAATCCCACTATCATTTCTCATGCTTTGCAACCAAATGATTCCTTCCTTATATTTGCATCAGATGGTTTATGGGAACACCTGACTAATGAAAAAGCTGTGGATATTGTCAACAGCAATCCACACGCCGGTAGCGCGAAGAGACTTATCAAAGCTGCGCTCCACGAAGCAGCAAGAAAACGAGAAATGAGATATTCAGATCTCCGTAAGATTGACAAGAAGAGGCACAGTGCTAGACCCGGCACTTTCACTTCGAAGCGCTCTCGATCACTGACTTGTATGATTGTAAGCAGTCTTGTACGAGTTTTTGGCAACTGTATCGATACCTGA 1128 0.4716 MLLALMNLLSLCWKPFGRDADRFDSIGVIGSSFAAREGKDGLLWFRDVGKYGSGDFSMAVVQANQVLEDQSQIESGPLGTFVGIYDGHGGPDASRYVCDHLFRHFQAISAESRGVVTTETIERAFRQTEEGYTALVSDLWNTRPQIASAGSCCLVGVIFQQTLFVANVGDSRVVLGKKVGNTGGVAAIQLSTEHNANLEAVRQELKELHPNDPQIVVLKHGVWRVKGIIQVSRSIGDVYMKHAQFNREPLNPKFRLPEPMNMPILSANPTIISHALQPNDSFLIFASDGLWEHLTNEKAVDIVNSNPHAGSAKRLIKAALHEAARKREMRYSDLRKIDKKRHSARPGTFTSKRSRSLTCMIVSSLVRVFGNCIDT* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2320 375 SMART PP2C_4 42 362 IPR001932 -
Apr9g2320 375 Pfam Protein phosphatase 2C 79 326 IPR001932 -
Apr9g2320 375 PANTHER ALPHABET, ISOFORM E-RELATED 3 350 - -
Apr9g2320 375 PANTHER PROTEIN PHOSPHATASE 2C 42-RELATED 3 350 - -
Apr9g2320 375 SUPERFAMILY PP2C-like 65 321 IPR036457 -
Apr9g2320 375 CDD PP2Cc 56 327 IPR001932 -
Apr9g2320 375 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169
Apr9g2320 375 ProSiteProfiles PPM-type phosphatase domain profile. 55 364 IPR001932 -
Apr9g2320 375 Gene3D - 47 346 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2320 Apr-Chr9 30841027 30845103 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2320 4 309 PP2C-type Phosphatase Gene Family AT3G17090 68.932 5.28e-158 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2320 K01102 - gmx:100790813 635.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2320 9 30841027 30845103 Apr9g2320 9 30841027 30845103 ECH
Apr9g2320 9 30841027 30845103 Apr1g2053 1 30054728 30060483 PCT