Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2294 ATGAATATGGCAAGTAACTCAGCGGCGCAGCTGGTGGGTTCAGAGATACATGGATTCCACACATTGCAAGATTTGGATGTGGGGAGCATTATGGAGGAAGCAAGAACCAGATGGCTCCGTCCCAATGAGATTCATGCCATGCTTTGTAATTACAAGTATTTTACCATTAATGTCAAGCCAGTGAATTTGCCAAAAAGTGGTACTATTGTATTATTTGACCGCAAGATGCTTAGGAACTTTCGAAAAGATGGGCACAACTGGAAAAAGAAAAAGGATGGGAAAACTGTTAAAGAGGCTCATGAGCACTTAAAAGTTGGTAATGAAGAAAGGATCCACGTATATTATGCACATGGCCAAGATAACCCAAATTTTGTCCGTAGATGTTATTGGCTACTTGATAAGAGTTTGGAACACATAGTGCTTGTTCATTACCGCGAAATACAGGAGGTGCAAGGTTCTCCTGTCACTCCTGTAAATTCATACTCTAGTTCTGCCTCTGATCCTACTGCACCATGGATTTTATCAGAAGAAATAGATTCAGGGACCAAAACTACATATGCTGGCGATATGGGTAACATCCAAGTCAAAAGTCATGAACTGAGACTTCATGAGATTAATACACTTGAATGGGATGACTTAGTTGTTGCAAATGACCTTAATGCCTCCATTGCGCCTAATGGAGGCATTGTTCCGTATTTTGATCAACATCAAATTTTACTGAATGACAGTTTCTACAATGGTTTTTGTCACCAGGTAGCCAGCAATCCATCTGCAGATATTTCTTCTTTCAATAATCTAACTCAGCCAATTGTGAGCAGCAACCGTGTTCCTTACAATTTTTCAGAAAGTGTTAATATGCAGACAGTGGACAATCAGGCAAATCCAAATGAGCAGAGGAGTAATACTGTTTCTTTAAATGGTGTTGATTCCCTGGACACTGTGGTCAACAATAGATTGCAAAGTCAGGACAGCTTTGGAATGTGGGTGAACAACATCATGTATGATTCACCATGTTCGGTAAATGACTCAGCTCTTGAATCTTCAGTTTCATCTGCTCATGAACCATATTCATCTTTGGTAGCGGATAATCAGCAACTTTCTCTTCCAGAACAAGTATTTAATCTGACTGATGTATCCCCTGCATGGGCACCTTCCACTGAGAAATCAAAGGTCCTGGTGACTGGATTCTTGCACAAAGACTATATGCACCTTTCAAAGTCTAATCTATTGTGTGTCTGTGGTGATGTCAGTGTTCCGGCAGAAATTGTTCAGGTTGGGGTCTACAGGTGCTGGGTATCACCACATGCTCCAGGATTTGTGAATCTCTACTTGAGCTTTGATGGCCATAAGCCTATCAGCCAAGTTGTTAATTTTGAATATCGTACTCCTGTTTTGCATGATCCTGCAGCTTCTATGGACGAGAATGACAATTGGGACGAGTTTCGGCTTCAAATGAGGCTTGCTTATTTGCTCTTTGCTAAACAACAGACCCTTGATGTTATCTCTGGCAAAGTATCATCTAATGGACTAAAGGAGGCTAGGAAATTTGCCTTCAAAACATTATTTATTTCCAATAGTTGGCAATACCTAATCACGTCAATTGAAGACAAAAAAATTCCATTTTCACAAGCAAAAGATGACCTATTTGGAATTGCATTGAAAAACAGACTAAAGGAATGGCTGTTAGAAAGAATTGTCCTAGACTGTAAGACTACCGAATATGATGCACATGGCCAAAGTGTTATCCATCTGTGTGCAATTTTGGACTATACTTGGGCTGTTTCCTTATTTTCATGGTCAGGGTTGTCACTGGATTTCCGTGATAAATGTGGATGGACAGCTCTTCACTGGGCAGCATATTGTGGAAGGGAGAAAATGGTTGCAACTCTGTTGTCTGCTGGGGCAAAGCCATATTTGGTCACCGATCCTACTCCACAAAATCCTGGTGGATGTACTGCAGCTGATCTTGCTTATATGAGGGGTTATGATGGCTTAGCAGCTTATCTTTCAGAAAAATCTCTGGTTCAGCACTTCAATGACATGAGCTTAGCTGGAAACATCAGGGGCTCACTTGAAACTAGCACGACTGATCCAGTAAATATTGATAACCTCCCTGAGGATCAGAAGAACCTGAAGGATACATTGGCAGCTTGCCGAACCGCTGCTGAGGCAGCAGCACGCATCCGTGAAGCATTTAGAGAACACTCCCTAAAACTGAGATCTAAGGCAGTTGAGCTTTCCAATTCAGAGGCTGACGCACGAAAAATAGTTGCAGCAATGAAGATTCAGCATGCCTATAGGAACTTTGAGACAAGGAAAATGATGGTAGCTGCTGCTCGCATTCAGCATACATTCCGTACATGGAAGATTCGTAAAGAATTTCTCAACGTTCGTCGGCAGGCTATTAAGATTCAGGCTGCTTTCCGGTGCTTTCAAGTGCGTAAGCATTATCGCAAAATTCTTTGGTCTGTCAGTGTGGTTGAGAAAGCAGTGCTGCGTTGGCGTTTGAAGAGAAGGGGCTTCCGAGGGCTCCAGGTCAACGCCATTGAAGCAGAAACCGGTGATCAGGATCAGCAAAGTGATGTAGAGGAGGAGTTCTTTCGGACTGGGAGGAAACAAGCTGAAGAACGTGTTGAAAGATCTGTGGTACGCGTGCAGGCCATGTTCCGTTCTAAGAAAGCGCAAGAAGAGTACAGAAGGATAAAGTTGGCCCTTAATCAAGCAAAGATGGAACGGGAATATGAACAATTTCTGAGTACTGAAGTTGACATGGAGGAAATGAATACATAG 2790 0.4226 MNMASNSAAQLVGSEIHGFHTLQDLDVGSIMEEARTRWLRPNEIHAMLCNYKYFTINVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPNFVRRCYWLLDKSLEHIVLVHYREIQEVQGSPVTPVNSYSSSASDPTAPWILSEEIDSGTKTTYAGDMGNIQVKSHELRLHEINTLEWDDLVVANDLNASIAPNGGIVPYFDQHQILLNDSFYNGFCHQVASNPSADISSFNNLTQPIVSSNRVPYNFSESVNMQTVDNQANPNEQRSNTVSLNGVDSLDTVVNNRLQSQDSFGMWVNNIMYDSPCSVNDSALESSVSSAHEPYSSLVADNQQLSLPEQVFNLTDVSPAWAPSTEKSKVLVTGFLHKDYMHLSKSNLLCVCGDVSVPAEIVQVGVYRCWVSPHAPGFVNLYLSFDGHKPISQVVNFEYRTPVLHDPAASMDENDNWDEFRLQMRLAYLLFAKQQTLDVISGKVSSNGLKEARKFAFKTLFISNSWQYLITSIEDKKIPFSQAKDDLFGIALKNRLKEWLLERIVLDCKTTEYDAHGQSVIHLCAILDYTWAVSLFSWSGLSLDFRDKCGWTALHWAAYCGREKMVATLLSAGAKPYLVTDPTPQNPGGCTAADLAYMRGYDGLAAYLSEKSLVQHFNDMSLAGNIRGSLETSTTDPVNIDNLPEDQKNLKDTLAACRTAAEAAARIREAFREHSLKLRSKAVELSNSEADARKIVAAMKIQHAYRNFETRKMMVAAARIQHTFRTWKIRKEFLNVRRQAIKIQAAFRCFQVRKHYRKILWSVSVVEKAVLRWRLKRRGFRGLQVNAIEAETGDQDQQSDVEEEFFRTGRKQAEERVERSVVRVQAMFRSKKAQEEYRRIKLALNQAKMEREYEQFLSTEVDMEEMNT* 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2294 929 ProSiteProfiles Ankyrin repeat region circular profile. 610 635 - -
Apr9g2294 929 ProSiteProfiles IQ motif profile. 798 825 IPR000048 GO:0005515
Apr9g2294 929 ProSiteProfiles IQ motif profile. 879 907 IPR000048 GO:0005515
Apr9g2294 929 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 16 925 - -
Apr9g2294 929 Pfam CG-1 domain 33 146 IPR005559 GO:0003677
Apr9g2294 929 SMART iq_5 796 818 IPR000048 GO:0005515
Apr9g2294 929 SMART iq_5 773 795 IPR000048 GO:0005515
Apr9g2294 929 SMART iq_5 877 899 IPR000048 GO:0005515
Apr9g2294 929 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 16 925 - -
Apr9g2294 929 Gene3D - 773 821 - -
Apr9g2294 929 Coils Coil 891 911 - -
Apr9g2294 929 SMART ANK_2a 610 639 IPR002110 GO:0005515
Apr9g2294 929 SMART ANK_2a 649 678 IPR002110 GO:0005515
Apr9g2294 929 Pfam Ankyrin repeats (3 copies) 559 637 IPR002110 GO:0005515
Apr9g2294 929 Gene3D Immunoglobulins 369 464 IPR013783 -
Apr9g2294 929 ProSiteProfiles Ankyrin repeat profile. 610 642 IPR002110 GO:0005515
Apr9g2294 929 SUPERFAMILY E set domains 374 461 IPR014756 -
Apr9g2294 929 SUPERFAMILY Ankyrin repeat 557 674 IPR036770 -
Apr9g2294 929 Gene3D - 543 680 IPR036770 -
Apr9g2294 929 ProSiteProfiles IQ motif profile. 774 803 IPR000048 GO:0005515
Apr9g2294 929 ProSiteProfiles CG-1 DNA-binding domain profile. 27 153 IPR005559 GO:0003677
Apr9g2294 929 SMART CG_1_2 30 148 IPR005559 GO:0003677
Apr9g2294 929 Pfam IQ calmodulin-binding motif 799 818 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2294 Apr-Chr9 30648912 30657231 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2294 30 911 CAMTA Transcription Factor Family AT3G16940 54.904 0.0 940
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Apr9g2294 CG-1 1.9e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2294 K21596 - gmx:100793970 1581.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2294 9 30648912 30657231 Apr9g2294 9 30648912 30657231 ECH
Apr9g2294 9 30648912 30657231 Apr1g2088 1 30411961 30420834 PCT