Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2288 ATGGGGAGAGCTCCTTGCTGTGAGAAGGTGGGGTTGAAGAAAGGAAGATGGACTACTGAAGAGGATAAGATTTTAACTGAATACATCCAAGAAAACGGTGAGGGATCATGGAGGTCCTTGCCCAAAAATGCAGGCTTGTTAAGATGTGGGAAGAGTTGTAGACTGAGATGGATCAACTACTTGAGATCAGACGTGAAGAGAGGGAACATCACTCCTCAAGAGGAAGAGATCATTGTCAAGTTGCATGCTGTTCTCGGTAACAGGTGGTCAGTAATAGCAGGACATTTACCAGGTCGCACGGACAATGAAATAAAGAACTATTGGAACTCTCATTTGAGGAGAAAAATTTACTGTTTCATGAAGTCATTAAATGAGTCCCTTCCTCCCATTGACATGGCTGCTGTAAACGTAGCAGCCACTTCCAAGAGAAGAACGAGTCGAAGCATAAAAACCCAACAAGCCACACAAGACGACAAGAACATGCCTTTCATCCAAAACTCCTCACAAGAGAACACAAGAGAAGTGCCTAAACTTCAACCATCAATGCATAAAAGAAATGTCACTTCACAAACTTTGAATGATGATGATGACATTAAGGGTTACACTAATTTGGATGCTTATTGTGAGATTGTGGACAACACAAATGGTTCTATAACAGCCTCATGCCCCAGCATGGAATTAGGAGTTGAAGCCTTGGGACCATATCAATGGTTAGATGATGAAATTATGAAACTTAGTTACATGTTTGAAAATGGGGTGCTTGTAAACCAAGGTGGGATTGTAAGCAATGAAGAAGGGTTTAGTAGAAATAATTGTGGACTAATTGGAGAGGATATAATGAGTGGAAATTATGAGGAGAGTAAGGGTGGTGTTTGGAGCTCATCAAATGCAGAAAGTGGAGAGTGGAACAATAGCTGTTCTTCAGTTAATTCTGTGTATGATTATCATCAGTGGCCTGATATGCATTTAGAAGGTAGTGTTCAATCCTATAGTCCTTGGGATCTTTGTGAAGAAGACCAGAATGTGACAAGCTTTTGGGGTACTAGCAATTGTGAAGGAAGTGGCTTTTATCAGTGA 1077 0.4095 MGRAPCCEKVGLKKGRWTTEEDKILTEYIQENGEGSWRSLPKNAGLLRCGKSCRLRWINYLRSDVKRGNITPQEEEIIVKLHAVLGNRWSVIAGHLPGRTDNEIKNYWNSHLRRKIYCFMKSLNESLPPIDMAAVNVAATSKRRTSRSIKTQQATQDDKNMPFIQNSSQENTREVPKLQPSMHKRNVTSQTLNDDDDIKGYTNLDAYCEIVDNTNGSITASCPSMELGVEALGPYQWLDDEIMKLSYMFENGVLVNQGGIVSNEEGFSRNNCGLIGEDIMSGNYEESKGGVWSSSNAESGEWNNSCSSVNSVYDYHQWPDMHLEGSVQSYSPWDLCEEDQNVTSFWGTSNCEGSGFYQ* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2288 358 CDD SANT 16 61 IPR001005 -
Apr9g2288 358 Gene3D - 71 116 - -
Apr9g2288 358 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Apr9g2288 358 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Apr9g2288 358 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 318 - -
Apr9g2288 358 Gene3D - 13 66 - -
Apr9g2288 358 CDD SANT 71 112 IPR001005 -
Apr9g2288 358 PANTHER MYB TRANSCRIPTION FACTOR 2 318 - -
Apr9g2288 358 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Apr9g2288 358 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Apr9g2288 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Apr9g2288 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Apr9g2288 358 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Apr9g2288 358 SMART sant 66 114 IPR001005 -
Apr9g2288 358 SMART sant 13 63 IPR001005 -
Apr9g2288 358 MobiDBLite consensus disorder prediction 144 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2288 Apr-Chr9 30598248 30600377 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2288 1 151 MYB Transcription Factor Family AT2G47460 68.590 1.37e-73 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr9g2288 Myb_DNA-binding 2.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2288 K09422 - gmx:100795019 530.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2288 9 30598248 30600377 Apr9g2288 9 30598248 30600377 ECH